Podospora pseudoanserina: QC764_304250
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Entry
QC764_304250 CDS
T09816
Symbol
NMD2
Name
(RefSeq) mRNA decay protein
KO
K14327
regulator of nonsense transcripts 2
Organism
ppsa
Podospora pseudoanserina
Pathway
ppsa03013
Nucleocytoplasmic transport
ppsa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppsa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
QC764_304250 (NMD2)
03015 mRNA surveillance pathway
QC764_304250 (NMD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsa03019
]
QC764_304250 (NMD2)
Messenger RNA biogenesis [BR:
ppsa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
QC764_304250 (NMD2)
mRNA cycle factors
P-body specific factors
QC764_304250 (NMD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
87966408
NCBI-ProteinID:
XP_062801534
LinkDB
All DBs
Position
3:complement(1502080..1507209)
Genome browser
AA seq
1145 aa
AA seq
DB search
MDRARRRELRELNQRAWNGEKDLFPVGKSLDSTMKKNTAFIKRLRTAISPATMNTFLQEI
KTVSLSKYLSEIVSACHEGLCKLKSPGEIEAGVEIVSALHQRFGPDEFTMYLGWYLGKAM
ATPDKSFLKTLSAEAKEKEERDRLTRQRVLLRVVTELWLVGILKTLDDIKRPDDAANGTT
GKTTEVKSRAAAKGGAAEPFPLEVLKDLLGHDREHANLPLLVIFVKAFSWDVLGVKSDSR
KTVGEDGTTKEDETNEEQDGTTEEDAPFTSPELQERFRNVLRRYFEDVKGHLVRDQKAIF
SQSRKNAEAYVKSGEVFEDRQANFEKQVKAQERLVANAHVIAEIIGAEMPELKDSDDANA
NANGSIGIVKAGEYLRGQGDGSGIWEDEEERRFYENLVDLKGKVPGMLLEEVKKKKAEDE
QVGKKIDPAEVEAKQAEAAVDEQSMAIANKTIGAQVDALLARLPDLTSKDAIDQTAIDFC
FLNSKASRNRLIKALTDVPKGRGDLLPSWSRLVATLGQYMPDIPKGLVDYLDAEFRSLQR
RKEKEFLGQVRLGNIRYLAELTKFGIVPEHVVFHCLKVSLDDFSRMNIEIICNLLENCGR
YLLRNPETSPRMASFLETLQRKKSVQHIGQAERMLVENAVYYVDPPQRPAIQQKERTPIE
LFVRKLVYTDLTKRNYSKVVRQIRRLHWEEKEVVTILHKVLSKPGKVKYSNIHLLVVILS
AIHRYHNEFVISVIDTVIESVVFGLEQNNFEFNQRRIAEVKYLAEMYNYRMLDHPVIFEI
MYKIMTFGHGGPPIPGRLVSFDMPDDFFRIRLIATILETCGVFFNKGAAGKKLDYFLSFF
QYYIYTKDPLPMDIEFLVHDIFSLTRPQWKLASNLEEASEVFRLAVIQDHKTSGMDKIAE
QDDRTSAMSSDDEDGNDLQAGEQDDDDDEDAASDEGEIEESEHHGSYANSEYEEEEEIVV
TREEEEVDPEYEEEFEREYAKMMAESFGDARKFERKPQFDIPLPVRPKAREATGGEPAEA
ATTNPGGTMAFSLLTKKGNRQQTRTVELPSDSNFAVALINQRQAAKEEQQRIKNLVLNYD
LRENEENDGTTTLRDPLQLYSNIHNRAGNEKTNSYHHHNRIDNRAAKERGGQRVRKLQLS
DVDWT
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcgcgcgcagacgcgagctgcgcgagctcaaccagagggcctggaatggagag
aaggatctctttcccgtgggcaagtccctggactcgaccatgaagaagaataccgccttc
atcaaacgtctccgtaccgcaattagccccgcgaccatgaacacctttctccaggagatc
aagactgtcagcctctccaagtatctctccgaaattgtctccgcctgccacgaaggcctt
tgcaaactcaaatcccccggcgagatcgaagccggcgtcgaaattgtcagcgccctccat
cagcgcttcggtcccgacgagttcaccatgtatctgggctggtatctcggcaaggctatg
gctacaccggacaagagcttcctcaaaaccctctcggccgaagccaaagaaaaggaggaa
cgcgaccgtctgacccgtcagcgtgtcctcctgcgcgtcgtgaccgagctttggcttgta
ggcattctcaaaaccctcgacgacatcaagcggcctgacgacgctgcaaacggaaccacg
ggcaagaccactgaggtcaagtcccgagcagctgccaagggaggcgctgccgaaccgttc
cctctggaagttctgaaggatctcctgggccacgaccgtgaacatgcaaatttgcctctg
ctggtgattttcgtcaaggcttttagctgggatgttttgggagtcaagtctgatagtcga
aaaacagtcggggaagatggcaccaccaaagaggacgagacaaacgaagagcaggatggc
acgacggaggaagatgctcccttcacttctcccgaactccaagagcgctttcgaaacgtt
ctcaggcgatattttgaggacgtcaagggccatcttgttcgggatcaaaaggccattttc
agccagtctcgcaagaacgccgaggcctacgtgaaatcgggtgaagtctttgaggaccgt
caggcgaactttgagaagcaggtgaaggcccaggagcgccttgtggccaacgcccatgtg
atcgccgaaatcattggggctgagatgcccgagttgaaggatagcgatgacgcaaacgca
aacgcgaacggctcgatcggcatagtaaaggcgggagagtacctccgtggacaaggcgat
ggctccggtatctgggaggacgaggaggaacgtcgcttttacgaaaacctggttgatctc
aagggcaaggttcccggcatgcttctcgaagaggtcaagaaaaagaaggccgaggacgag
caagtcggtaagaagatcgatccggccgaggttgaggcgaagcaggcggaggctgcagtt
gatgagcagtccatggccattgcgaacaagaccattggtgctcaggttgatgctcttctt
gctcggcttccggatctcaccagcaaggatgccattgaccaaaccgccatcgacttttgc
tttctcaactccaaggcttctcggaacaggcttatcaaggccctcacagatgtgcccaaa
gggcggggcgatctccttcccagctggtctaggcttgtcgctacccttggccaatacatg
ccagacattcccaaaggtcttgtggactatcttgatgccgagttccgcagcctccaacgc
cgcaaagagaaggagttcttgggccaggtcagacttggcaatatccgctatctagccgaa
ctgaccaagtttgggattgtccctgaacacgtcgttttccattgcctcaaggtcagtctg
gatgatttctctcgaatgaacatcgagatcatctgcaatctcttggagaactgcggccga
tacctgctccgcaacccagagacgtcgcctcgcatggcctccttcctggagactctccag
cgcaagaaatctgttcagcatattggacaagccgagcgcatgcttgtcgagaacgccgtg
tactatgtcgatcctcctcaacggccggccatccagcagaaggagagaacccccatcgag
ctctttgtccggaagctggtctacacggatctgaccaagcgcaactacagcaaggttgtc
cggcagatccgcaggcttcactgggaagaaaaggaggttgtgacaatccttcacaaggtt
ctttccaagcccggaaaggtcaagtacagcaacatccatcttctcgtcgtcattctgagc
gctattcaccgctatcacaacgagttcgtgatcagcgttattgacaccgtcatcgaatct
gttgtgtttgggcttgagcagaacaactttgaattcaaccagcgcagaattgccgaagtc
aaatacctggcagagatgtacaactacaggatgctcgaccatcctgtaatctttgagatc
atgtacaagatcatgacctttgggcatggaggaccgcccatccccggccgtctcgtatcc
tttgacatgccagacgacttcttccggatccgcctgattgcgacaatcctggagacctgc
ggtgtgttcttcaacaaaggtgcagccggcaagaagctggattatttcctctccttcttc
cagtactacatctacaccaaggaccccctgccgatggacattgagtttttggtacatgac
atcttctcgctcactcgccctcagtggaagcttgcttcgaacttggaggaagcctcggaa
gtcttccggctggccgtcattcaagatcacaaaacctcaggcatggacaagattgccgag
caggacgacagaactagtgctatgtcgagcgacgatgaggatggcaatgatcttcaggcc
ggagagcaagacgatgatgacgacgaggacgcggcttccgatgaaggcgagatcgaggaa
tctgagcatcacggctcctatgccaacagcgaatatgaagaagaggaggagattgtggtc
accagagaagaggaggaagtcgaccctgaatacgaagaagagtttgagcgggagtatgcc
aagatgatggctgaaagctttggggatgcgcgcaagttcgagcgcaaacctcagtttgat
attcccctccccgtccgcccgaaagcccgtgaggctacaggaggcgagcccgccgaggcg
gccacgaccaacccaggcggcactatggccttctctttgctcacgaagaaaggaaaccgt
caacagacacggactgttgaactgccttctgattccaactttgccgtggctctgatcaac
caacgccaggcagccaaggaggaacagcagcgcatcaagaaccttgtcctcaactacgat
ctccgcgagaatgaggaaaacgacggtactaccaccctccgggacccccttcaactatac
agcaatattcacaaccgtgcaggcaacgagaaaaccaattcgtatcaccaccacaaccgc
atcgacaacagagccgccaaggagcgcggtggacagcgcgtccgcaagctccaactcagc
gacgtcgactggacatga
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