Podospora pseudoanserina: QC764_306570
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Entry
QC764_306570 CDS
T09816
Symbol
PCF11
Name
(RefSeq) mRNA 3' end processing factor
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ppsa
Podospora pseudoanserina
Pathway
ppsa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppsa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
QC764_306570 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppsa03021
]
QC764_306570 (PCF11)
03019 Messenger RNA biogenesis [BR:
ppsa03019
]
QC764_306570 (PCF11)
Transcription machinery [BR:
ppsa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
QC764_306570 (PCF11)
Messenger RNA biogenesis [BR:
ppsa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
QC764_306570 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_C
Pfc11_Clp1_ID
zf_PCFS4
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
87966626
NCBI-ProteinID:
XP_062801791
LinkDB
All DBs
Position
3:complement(2257336..2260255)
Genome browser
AA seq
736 aa
AA seq
DB search
MEDHGDEVAADFREALQDLTTNARFEIVTLTNIARENADHGLAISEVLTNHIKEAPASKT
LPALYVLDSIVKNVPTPYALYFGPKLYQIFMGSYTKVDNATRRKMDEMLKTWKEPVAGSI
SKKPVFPLELVRPIENALLAARNAYMEQAKFQTHLMRGRPAGPPARDTPTPPMGRAYQPP
PPPPHGQPPYQGPPNGQYPPPGEQAYPMRSGNTPNGVPNRATPPQPAPSAGPYAHYQPPP
NQGPYGVPPAPGINIDKLKDDIQQLIELDRAGFAQNMHDASKQNRLKALLDLQKVVQSQN
LPQEQLMIISDQVSKLAVNMRAAQAQPPPSYPPALPPPYNTHTPTPPVVTQQFAPPPVVA
AAPPPSVLPQLPAVLAAALGRPASNVAPVPVAAAPPPPVRPATTAGGAAPGTLSLDAILG
QGALAALLAAKKPATPQQSSTAPVPPAAAVPPALAALRSPPQQAAPFQPPPAPPVAQQQP
PAAAANPLTQNPSAILAMLRQSGLLGGTPGVPTPPPAIPSLPPPDPNIITLTPASLKFPR
LHLLPYLLDHLGPPCSQCGRRFPTTEEGRKKKTQHMDWHFRVHQRVAEAEQRGQHRSQFV
SELDWIQSHEEPDVDYNAPSGGGGSGDGDGSESDDNDWSAAVKGGRRKKNEKKKRWITAP
DEGDGTGTGTNKVCPICQEKFQSRYLEEVQDWVWMDAVVVGSGQGRRVFHGTCWDEVNTG
GGRGRAGAGDNGDVGE
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggaagaccacggcgatgaagtggcggccgatttccgtgaggcgctccaggacttgacc
accaatgctcgctttgaaatcgtcacattgaccaacatcgcccgagagaacgccgaccat
ggtctggccatttcagaggtcctcacaaatcacatcaaagaggcacccgcctccaaaacc
ctacccgccctctacgtcctggactcgatcgtgaagaatgttccgactccctacgcccta
tatttcggccccaagctctatcaaatcttcatgggttcctacaccaaagtcgacaacgcg
acacggagaaagatggacgaaatgctgaagacatggaaggaacctgtagccgggtccatc
tccaagaaaccggtcttcccacttgaattggttcgacccattgagaacgctctactggct
gcccgcaatgcctacatggagcaagccaaattccagacccatctcatgcgagggcgtccg
gccggcccgcctgccagagatacgccgacacctcctatgggcagagcttaccaaccacca
ccaccaccaccacatggacagccgccatatcagggaccacctaatggacagtacccgccg
cctggagaacaggcctatcccatgcgctccgggaacacacccaatggcgtccctaaccgt
gctacgccaccgcagcctgctccatcagccgggccatatgctcactaccagccacctccc
aaccaaggtccctatggtgttcctccagctccaggaataaacatagacaagttgaaagat
gatatccagcagttgatcgagctggacagggcgggttttgcccagaacatgcatgatgct
agtaaacaaaacagactgaaggctttgctggatttgcaaaaagtagtccagagccaaaac
ctgcctcaggagcagttgatgatcataagcgatcaagtttctaaacttgctgtaaacatg
cgcgctgcccaggcgcagccaccgccatcatatcctcctgctctgccaccaccatacaac
acgcacaccccaacacctcctgttgtaactcaacagtttgcacctcccccagttgttgcc
gctgctcctccaccttctgtactgccccaattaccagcggtactagcggcggctctggga
cgtccggcatcaaatgttgctcccgtgcccgtggcagcggcaccaccaccaccagtccgt
ccggcaaccaccgcaggaggtgccgctccgggaacactatctctcgatgcgattcttggc
caaggcgctctggctgcgcttttggcggccaagaaacctgccacccctcaacagtcatct
actgcgccggttccgccggcggcggctgtaccacctgctttggccgcgctgcgatcacca
ccgcaacaagcagctccatttcaaccaccaccagcaccaccagttgctcaacaacaaccg
cccgctgcggcagccaacccgttgacacagaacccatcggctatattggctatgctacgg
cagtccggccttctcggcggcacccccggcgtacctacaccaccacccgccatcccatct
ctcccacccccggatccgaacatcataactctcacccctgcctctctcaaattcccccgc
ctgcatctgttgccttatctcctcgatcacctcggccccccctgctcccagtgcggccgc
cgcttccccaccacggaagagggcagaaagaagaagacgcagcacatggactggcacttt
cgtgttcatcagcgtgttgctgaggctgagcaaaggggtcagcaccggtcgcagtttgtg
agcgagcttgattggattcagagtcacgaggagccggatgtggattataacgcccccagc
ggcgggggcgggtcaggagacggggatgggagcgagagtgatgataatgattggtctgct
gcggtaaaaggggggaggaggaagaagaacgagaagaagaagaggtggatcaccgcgcct
gatgagggggatgggacggggacggggacgaacaaggtctgcccgatctgccaggagaaa
ttccagagtaggtatctggaggaggtgcaggattgggtttggatggatgcggttgttgtt
ggatctgggcaggggaggagggtgtttcatgggacttgttgggatgaggttaatactggt
ggggggagggggagggcaggggcaggggacaatggtgatgttggggaatag
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