Podospora pseudoanserina: QC764_402660
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Entry
QC764_402660 CDS
T09816
Symbol
rrp4
Name
(RefSeq) Exosome complex component rrp4
KO
K03679
exosome complex component RRP4
Organism
ppsa
Podospora pseudoanserina
Pathway
ppsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QC764_402660 (rrp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsa03019
]
QC764_402660 (rrp4)
Messenger RNA biogenesis [BR:
ppsa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
QC764_402660 (rrp4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
QC764_402660 (rrp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP4
ECR1_N
KH_6
RRP40_S1
CB_ParB_C
ECR1_N_2
PCB_OB
Motif
Other DBs
NCBI-GeneID:
87967411
NCBI-ProteinID:
XP_062800187
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All DBs
Position
4:complement(<1028103..>1029176)
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AA seq
357 aa
AA seq
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MPITILPPKPSHPPPSPHDISDADSELSSDDGGGGAHLDFASLGLPSHQKSTHPPNNPLF
TNLVTPGTLITPDHQWMRGHGTYIPPSTTNITSSLAGITTRTNKLISVSPLRARYTPEVG
DLVVGRVLEVQAKRWRVDINSIQLASLPLSAINLPGGILRKRTETDELQIRTFFAEGDLV
VAEVQQLFQDGGAVLHTRSLKYGKLRNGLFVALSGQGGGSGVVRSRRQVWTMEGQNGGGK
MDVILGVNGYVWISKHIEQVAKELEQKHMGITNMEESVSAGVYSSQNDFIDSATMREIAR
LRNVVTALVENGCRVDEDMVIRGYAEACEMAMLGETGAEDIYLGGQRGEELTRALRN
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgcccatcacaatcctcccccccaaaccctcccacccacccccttccccccacgacatc
tccgacgccgactccgagctctccagcgacgatggcggaggaggcgcccacctcgacttc
gcctccctcggcctcccctcccaccaaaaatccacccacccccccaacaaccccctcttc
accaacctcgtcacccccggcaccctcatcaccccagaccaccaatggatgcgcggccac
ggcacctacatcccccccagcaccacaaacatcacctcctccctcgccggcatcaccacc
cgcaccaacaagctcatctccgtctcccccctccgcgcccgctacacccccgaggtaggc
gacctagtagtaggccgcgtcctcgaagtccaagccaagcgctggcgcgtagacatcaac
tcgatccagctcgcctccctccccctctcagccatcaacctccccggcggcatcctccgc
aagcgcacagaaaccgacgagctccaaatccgcaccttcttcgccgagggcgacctcgtc
gtcgccgaagtgcagcagctcttccaggacggaggcgcagtcctccacacgcgctcgctc
aaatacggaaaactccgcaacgggctgtttgttgctctttctgggcagggcggcgggtcc
ggggtggtacggtcgaggagacaggtctggacgatggaggggcagaacggaggggggaag
atggatgttatactgggggtgaatggttacgtctggatcagcaagcatattgagcaggtg
gccaaggagctggagcagaagcatatggggattacgaatatggaggagagtgtcagcgcg
ggggtgtacagcagtcagaatgactttattgacagcgctaccatgagggagattgccaga
ctgaggaacgtcgtgacggcgttggtggagaatgggtgcagggtggatgaggatatggtg
atacgggggtatgccgaggcttgtgagatggccatgttgggggagacgggggcggaggat
atctatttgggtgggcagaggggggaggagttgacaagagcgttgaggaattga
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