Podospora pseudoanserina: QC764_408360 Help Entry QC764_408360      CDS       T09816                                  Symbol CDC39 Name (RefSeq) CCR4-NOT core subunit cdc39   KO K12604   CCR4-NOT transcription complex subunit 1 Organism ppsa  Podospora pseudoanserina Pathway ppsa03018   RNA degradation Brite KEGG Orthology (KO) [BR:ppsa00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     QC764_408360 (CDC39)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ppsa03019]     QC764_408360 (CDC39) Messenger RNA biogenesis [BR:ppsa03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      QC764_408360 (CDC39)   mRNA degradation factors    3'-5' decay     Ccr4-NOT complex      QC764_408360 (CDC39) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Not1 CNOT1_CAF1_bind DUF3819 CNOT1_TTP_bind CNOT1_HEAT ARM_Cnot1 Motif Other DBs NCBI-GeneID:  87967986 NCBI-ProteinID:  XP_062800559 LinkDB All DBs Position 4:complement(2273750..2281758) Genome browser AA seq 2117 aa AA seqDB search MASPQLIHEHGMDVYSRYFTRLVASNASQIFPSAGRPVANSNNNNMQLLVAEMELLARDF SQARKIAESIETGTEDIFHNFDLSTFMEHFQLDALEKTLLALAFKLGSRTDLKTKADAIL STNYPTFVNILSRPTGEHMDMPAEFVAELLDRFIQLHPPNFNAAAKKELEYKVSMRYSQG GDGKPPPSQVLAALDLIRLLADRPPNALALYIYRVGSAFTKDEETCVSYLQNRPSNIQLS EEQVSAALLYTTISQTPPHKPSILVAALRRILPDSFQWQDVVSYFDHANARVTSAQFLRL YNALLPIALEHLDRFNIQRLWGGEWENPETQLSFICAYASLTPEQLDATTIPGLKPTFTV DEYVQSDRAIQEIAALAVRHPLVSEAALSAVFNVALHSMHASQSTEAKRLFQDVVVPNLH VFVTSAFGVPKPWPTMAEETLASLFEGFLINKTPTSDFVMESLWRRDKVWVMQRLEEQHA LKPIVLPTIFEFAVRHKWLQELVFLPTGFGLDLVAYAHAQGFLNLEQWASQNAERPGEMA RAINQFLLIKTNLEQTYQRSGDNGQAHTPLQVKTVYMMLDILDRFNLKAPVVDLINVQRH CITAYPRLINYGEGYDDIIDDNGRGGNMLAPAATTRMEEHYKKMYGDELQVRSVVEVLEH YKHSRVPLEQDIFACMIHGLFDEYAHYVDYPLEALATTAVLFGGIISHKLISRLPLKIGL GMILQAVKENRPEEPMYKFGLQALMQLFGRLREWPAFCKDLILIPGLQGTEAYRKAEEVV REHDEELARTLRNGLPAIAGSDKQLTNGGLEDSLSSEQHPPPFLSINVGPHPAGINYEDP TPDAQGKIQFALNNATDTTLQSIFKELQKMLDVKHQQWFASHLVEERAKMQPNYHHVYLE LVKQFEDRLLWTEVLRETYVSVQRMLNSEQTQSNSTERTHLKNLGGWLGLLTLARDKPIK HSNIAFRQLLIEALDTKRLIVVIPFVCKVLTQAANSNVFKPPNPWLMDIIHLLIELYHNA ELKLNLKFEIEVLCKCLDLDHEAIEPSGEILNRPPLEDVGDLVGPDNLDSFESLSLNGMT GVNSSLVSHPALAIPDLGPNLSVPSTEVVSAAKLHDIVRQALTRALQEIIQPVVDRSVTI AAISTQQMIRKDFATEGDPDRVRMAAVNMVKSTAGSLALVTSKEPLRANFTNYLRQLASE LPQGLPEGIIMLCVNSNMELASSIIEKSAEERGVPEIEDLLAEDLEARRHHRINRPNDPF MDPRLNRWAWTIPAPFKLQPSLSGLNDEQMAIYDDFARQSRVTAAAAAAAAAAAAASATP SHVPSSSDARSIANEVLGDQYNSVSTIPTPAETPSLPHMGVQPQHYPPVHAGMVNGRQPG ISPVDARNVAERVNSLLEKLATAVSNTAEEHFEDLPRTHEVINIHDAVVQLTIKTQQTSD EFAVYVATQISGLLFRPQPEPTSLLLETLVHVLETLRKVAGPATSQQIRWLFYQQSGSTF LNLPLISALLRTDLIDWHSIDAAMAKALNERSSGSIEFLESLMDLTLFSEAPVNLYTDFV QSLEEAWAWITEEPEVPGGQRFKAKVLGPSPEIHPDRTPEAQFEQFDYIFEEWVQLCNND CASEKAATKFVQQLNWRRHIVTKEDFFVFARQAIDKSVDRAEQSGHLGEGFSNESFQAVD ALVKMILIFTQSHDAPGTSESSRVAFLDSVLALGVLVLNNHHVRRGDAFNPRVFFRFFSN LFHQIMNLTERFSDSESEKIVLNFAARLWDLRPVVYPGFLFQWMGLLAHRAFLPAIMRMP NQAGWEPFTKLLTHLFSYLGNMLKAFEVSLAAKDLYSGTVKLVAVLFHDFPEYLSANHVQ LCQCLPSHATQLINMILSASTTPFDKVPDPFRPGLKIDRIPEMKDPVVSLYDCAGQLKEL GLYDILEQSLQNGPSEDAIAQITHAMHHADTDLTTFGFVPVNVDRRVVDAVVSHIANAAS QRAVNNSDAPVFVSGAPDVKTLHMLVTEVPAETRYYLLSSMVNELRFANASTNYFSHAIV EIFGHDLDDPEETEIRQQIVRVLLERMVGYWPQPWGLVVTILELLKNEKFHFFELPFIKA APEVAARFEAILRPVVA NT seq 6354 nt NT seq  +upstreamnt  +downstreamnt atggcttctccccagcttatccatgagcacggcatggatgtctattcgagatacttcacg cgcctggtggcctccaatgcctctcagatcttccccagcgcggggcggccagtagcgaat tccaacaataacaacatgcaactcctcgttgccgaaatggagctgcttgccagagacttc agccaagcgaggaagatcgccgagtcgatcgagaccggcaccgaagatatattccacaat ttcgacttgtcgacttttatggaacacttccaactcgatgccctcgaaaagacactgttg gccctggccttcaaactaggtagcaggactgacctgaagaccaaagcggatgccattttg tctaccaactacccaacctttgtgaatatcttgagtcgaccgactggggaacacatggac atgcccgccgaattcgttgccgaactgctcgaccgattcatacaacttcacccgccaaac ttcaatgctgccgccaagaaggagttggagtacaaggtgtcgatgcggtattcacaagga ggagacggaaagccgcccccctctcaggttctggcggccctggacctgattcgcctcctc gccgacaggccaccgaatgcactggccctctacatataccgtgtcgggtcagccttcacc aaggacgaggagacatgcgtgagctacctccagaaccgaccttccaacatccaactgtcc gaagaacaagtatctgccgcgcttctgtacaccaccatcagccagaccccgccacacaaa ccctcgattctcgttgcggccctgaggcggatactgcccgacagcttccagtggcaggat gtcgtttcgtatttcgaccatgcgaatgcacgcgtaacttcggcgcagtttctgcggtta tacaatgcattattacccatcgcgctcgagcatctcgacaggttcaacattcaacggctg tggggcggagaatgggagaatcccgaaacccagctgtcctttatttgcgcctatgcctca ctcaccccggagcaactggatgccacaaccatcccaggcctcaagccgacgtttacggtg gacgaatacgtacaatccgaccgggcaattcaggaaatagctgccctcgctgttagacac ccactggtctccgaggctgctttgtctgctgtcttcaatgtggctctgcactcgatgcat gcctcacagagcacagaggcgaagcgcctgtttcaagacgtcgttgtgcctaatctacat gtctttgtcacctcagcctttggggttcctaagccgtggcccacaatggccgaagagacg ctggcgtcgctattcgaggggtttctgatcaacaagacaccgacctccgactttgtgatg gaaagcctctggagacgggacaaggtgtgggtcatgcagcggctggaagaacagcatgct ctcaagcctattgtcttgccaaccatcttcgagtttgcggtgaggcacaagtggctccag gagctggttttccttcccactggcttcgggcttgatctcgttgcctatgcgcatgcgcaa ggttttctgaacttggagcaatgggcaagccagaacgctgagcgacccggcgagatggcc agggccataaatcagtttctgttgataaaaacgaacctggagcagacgtatcagcggagc ggagacaatggacaagcccacacacccttgcaggtcaaaacagtctatatgatgctcgac attttggacaggttcaacctgaaagcccctgttgtggatctgattaatgttcagagacac tgcataacagcttacccccgcctgattaactatggggaaggttacgacgacatcatcgat gacaatgggcggggcgggaatatgcttgcaccagcagccacaaccaggatggaagaacac tacaagaaaatgtacggcgatgaattgcaggttcgcagtgtggtcgaggttctcgaacac tacaaacattcgcgtgtgccgctggagcaggacattttcgcgtgcatgattcatggtctg tttgacgaatacgcccattatgtcgactatcctctcgaggccctcgccactacagcagtg ctcttcggtgggataatctctcacaagttgatatcgagactccccctcaaaattggtttg ggtatgatcttgcaggccgtcaaggagaatcgtcccgaggagcccatgtacaagttcggt cttcaggcgctcatgcagctctttggccggctgcgggaatggcctgcgttctgcaaggac ttgatcctgatacctggactacagggaacggaggcgtacaggaaggcggaagaggtggtt cgcgagcatgacgaggagttggcccgaacccttcgcaacggtcttccagccatcgccggc agtgacaagcaactgaccaatggcggtctggaggacagtctcagttcggaacagcaccct cccccgttcctgtccattaatgttggcccacatcccgccgggatcaactacgaagacccc acgcccgatgcccagggcaaaatccagtttgctctcaataacgccaccgacacgaccctg cagtcgatattcaaggagctccagaagatgctggatgtcaagcaccagcagtggttcgcc agtcacctggtggaggagcgcgccaagatgcagccgaactaccaccatgtctacctcgag ctggtgaagcagtttgaggataggctgctgtggaccgaagttctgagggagacctatgtc agcgtccagcgcatgctcaactcggagcagacgcagtcgaattcgaccgagaggactcac ctcaagaatctgggtggctggcttggcctgttgacccttgctcgtgacaagcctatcaag cacagcaacatcgccttcaggcaactcctgatcgaagccctcgataccaagcgtctcatt gtcgtcatcccctttgtctgcaaggtcttgacccaggcagccaactcgaacgtgttcaaa ccgccgaacccctggctcatggacattatccacctcctcattgaactctatcacaacgcc gagctcaagctcaatctcaagtttgagatcgaggtgctctgtaagtgcctcgatctcgat catgaggcgatcgagccatctggtgagatcttgaaccggcctcctctcgaggacgtgggt gacttggttgggccagataatctcgacagttttgagagcctatccctcaacggcatgacg ggagtgaacagctcacttgtctcgcacccggctcttgccatccccgacttggggcccaac ctgagcgtcccgtccaccgaggttgtcagcgccgcgaagctgcacgacattgtccgtcaa gctctcacgcgcgcgctgcaagagatcatccagcctgttgtggataggtctgtgaccatc gccgccatctctacgcagcaaatgatccgcaaggacttcgcaaccgagggcgacccggac agggttcggatggctgccgtcaacatggtcaagtctactgctgggagcttggcacttgtg acctccaaggagccattgcgcgccaacttcaccaactatctccgccagctcgcctcggag cttcctcagggtctcccagaaggtatcatcatgctgtgtgtcaactccaacatggagctg gcttccagcatcatcgaaaagtcggccgaggagcgcggtgtccccgagattgaggacttg ctcgcagaagatctcgaggcgcgccgccatcaccgcatcaaccgacccaacgacccattc atggatccccgcctgaaccgctgggcctggactatccccgctcctttcaagctgcagccc agcttgagcggcctcaatgatgagcaaatggccatctacgatgattttgctcgacaatca agggtgactgctgctgcggctgccgccgccgctgccgccgccgccgcctctgctacgcct tcacacgttccttcatcgtcggatgcgagatcaattgcaaacgaagtcctcggtgaccag tacaactcggtgtccaccattcctacccctgctgaaaccccatcgcttccccacatgggc gtccaacctcagcattaccctcctgttcatgctggcatggtcaatggccgacagcctggc atcagccctgtcgacgctcggaacgtggcggaacgggtgaacagcttgttggaaaagctg gcgactgccgtcagcaacacggccgaggagcactttgaggatctccctcggacccatgaa gttatcaacattcatgacgccgtcgtccagcttacaatcaagactcaacagacatctgat gaatttgcagtctatgtggcgacccaaatctccgggcttctcttccgcccgcagcccgaa cctacttccctcctcttggagactctggtccacgtgctggagacgctgcgaaaggttgcg ggcccggcgacgagtcaacagatccgctggctgttttaccagcagtcaggtagtactttt ttgaatctgcccctgatctcggcgctgctcagaacggacctcattgattggcacagcatc gatgcagccatggccaaggcgttgaatgaacggagcagcggttccattgagtttctggag tccttgatggatcttacgctgttcagtgaggcccctgtcaatctctataccgatttcgtt cagagcttggaggaagcctgggcgtggataactgaagagcccgaagtgccaggtggccag cggttcaaggccaaggtgctggggccttcgcccgagattcatcctgaccgaacccccgag gctcagttcgagcagtttgactacatctttgaggaatgggtgcagctatgcaacaacgac tgcgcctcggaaaaggctgctacaaagtttgtgcaacagttgaactggcggcggcacatt gtcaccaaggaggactttttcgtctttgcgaggcaagcaatcgacaaatccgtcgaccgt gctgagcaaagtggccaccttggtgaaggcttcagcaacgagagcttccaggcagttgac gctctcgtcaagatgatcctcatcttcactcagtcccacgacgctcctggcaccagcgaa tcatcgcgtgtcgccttcctggactctgtccttgctcttggtgtgcttgtgttgaacaac caccacgttagacgcggggacgctttcaacccacgcgtgttcttccgcttcttctccaat ctcttccaccagatcatgaacctgacggagagattctcagacagtgagagcgaaaagata gtgctcaactttgcggcacgtctatgggaccttcggccggttgtgtaccctggcttcttg tttcaatggatgggtctcttggctcaccgcgcctttctcccagcgatcatgcgcatgccc aaccaggcaggctgggagcccttcaccaagctccttacccatctcttctcttatctcggc aacatgctgaaagctttcgaagtgtcccttgccgctaaggacctgtactcgggcacggtg aagcttgtggctgtgcttttccacgacttcccggagtatctttctgccaaccatgtgcag ctatgccagtgcctgccctcgcatgccacacagctcatcaacatgatcttgtcggcgtcc acgacgccgttcgacaaggtgcccgatccctttcggccgggactcaagattgatcggatc cccgagatgaaggacccggtggtgagcctttatgactgcgccggccagctcaaggaacta gggctctatgacatcctggagcagtcattgcaaaacggaccctcggaggacgccatcgcc caaattacgcacgcgatgcaccacgccgataccgacctgaccacgtttggctttgtgcct gtcaatgtcgaccgccgagttgtcgacgccgtggtttcccacatcgccaacgcggcctcc caacgcgctgttaacaacagtgacgcgcccgtgttcgtgtccggggctcccgacgtcaag actctgcacatgctggtcaccgaggtgccggccgagacacggtactatcttctcagcagc atggtcaacgaactccggttcgccaacgcgtcgacaaactatttcagccatgccatcgtc gaaatttttggtcacgatcttgacgacccggaggagacagagattcggcagcagattgtg cgagttctcttggagcgcatggttgggtactggccccagccatggggtctcgtggtcacg atcctcgagttgctcaagaatgaaaagtttcatttctttgagctgccgtttatcaaggcg gctcctgaggttgccgcccgcttcgaggctatcctccgccccgttgtggcgtag

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