Podospora pseudoanserina: QC764_602190
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Entry
QC764_602190 CDS
T09816
Symbol
SYF1
Name
(RefSeq) pre-mRNA-splicing factor syf1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ppsa
Podospora pseudoanserina
Pathway
ppsa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppsa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
QC764_602190 (SYF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsa03019
]
QC764_602190 (SYF1)
03041 Spliceosome [BR:
ppsa03041
]
QC764_602190 (SYF1)
Messenger RNA biogenesis [BR:
ppsa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
QC764_602190 (SYF1)
Spliceosome [BR:
ppsa03041
]
Complex B
Other components
Prp19-related factors
QC764_602190 (SYF1)
Complex C
QC764_602190 (SYF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_8
TPR_15
RPN7
NRDE-2
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
87969597
NCBI-ProteinID:
XP_062797524
LinkDB
All DBs
Position
6:complement(1808956..1812148)
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AA seq
822 aa
AA seq
DB search
MALALSSGRQPDLALVSDDDYPYEQDIQRNPGSTKPWLAYIDYKIQHGTLREQAYVMERA
CIQLPRSYKLWKMYLRFRTKHVAKLNAAIFTSEYQKVNALFERALILLNKMPRIWEMYLN
FLMQQPLVTLTRHTFDRALRALPITQHNRIWALYRPFANSAEGLTAVKIWRRYTQVHPED
AEDFIELLIQSELYTEAVKRYIDILNNPRFQSKNGKGHYELWSEMVDLLVEHAVDIETGH
ETGIDVERIIRSGIERFADQRGKLWCGLATYWIRRGSFERARDVFEEGITTVMTVRDFTL
IFDSYTEFEESVIGALMEMASGRAEKGVVDEVADFDLDIRMMRFEHLMDRRPFLLNDVLL
RQNPNNVTEWEKRVALWGDNKQEVVQTYTDAIAAIQPKKAVGAFHQLWANYAKFYENGGD
IRSARTIMEKAVKVPFKSVAELADMWIEWAEMELRNENFDDAVRIMAKAVQAPKRSNVDY
FDETLSPQQRVHKSWKLWSFYVDLVESVSTLEETKKIYERIFELRIATPQTVVNYANLLE
EHKYFEESFKIYERGLDLFSYPVAFELWNLYLTKAVDRKISIERLRDLFEQAVEDCPAKF
AKVIYLMYGNLEEERGLARHAMRIYERATRAVSDEDRADMFNFYITKSASNFGLPSTRPI
YERAIATLPDNEAKDMCLKFADMEKRLGEIDRARAIYGHGSQFCDPRTNPGFWQKWEQFE
VQHGNEDTFKEMLRIKRSVQAQYNTDVNFIASQALARAQQAKNGEGGGEVDQEVADAMEQ
LERQARAPAGFVAASEGIKGSVVAPKVVEVANPDAIELDDME
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggcactctcctctggccgccagcctgatctggcgcttgtgtccgatgatgac
tacccctacgagcaagacattcaacgaaaccccggcagcaccaagccatggctcgcctac
attgactacaagattcaacatgggacacttcgcgagcaagcctacgtcatggagagggca
tgtatccaattgccgcgctcctataagctgtggaaaatgtatttacgattccgaacgaag
cacgtcgcaaagctcaatgccgccatcttcacctccgaataccaaaaggtcaatgcactc
tttgagcgggcgctgatcctcctcaacaaaatgccgcgcatctgggagatgtacctcaac
ttcctcatgcagcagcccctcgtcaccctcacacgacacaccttcgaccgcgcactccga
gcacttccgattacacaacacaacaggatatgggccttgtaccgaccgttcgccaactcg
gccgagggtttgacggctgtcaagatctggaggcgctacacacaggtccacccggaggat
gccgaagactttatcgaacttttgattcagagcgagctgtacaccgaggcagtcaagagg
tacatcgacattctcaacaacccacgattccagagcaagaacgggaaggggcactacgag
ctttggagcgagatggtggatctgttggtggagcacgctgtcgacattgaaacgggacac
gaaacaggcattgacgtggaacggatcattcggagcggaatcgaacggttcgcggaccag
cgcgggaaactgtggtgcggcctggctacctactggattcgaaggggcagctttgagagg
gcaagagatgtttttgaggagggcatcacaacagttatgaccgtccgggactttacgctc
atttttgactcgtacactgagtttgaggagtctgtcattggggcgctgatggagatggcc
tcggggcgggcggaaaagggcgtggtggatgaggtggctgattttgatctggatatcagg
atgatgcggtttgaacatctgatggaccgccgaccgttcctcttgaacgatgtgttacta
cgacagaacccgaacaatgtcaccgagtgggagaagagagttgctctgtggggagacaac
aagcaggaggttgtacagacttatacggatgctatcgctgctattcagccaaagaaggcc
gttggcgccttccatcagttgtgggctaactatgccaaattctacgaaaacggaggggat
atccggagcgcgaggactatcatggaaaaggcggtcaaggtgcccttcaagtcggtagct
gagctagccgacatgtggatcgagtgggcagagatggaactccgcaacgagaactttgac
gatgccgtccggatcatggccaaagctgtccaagctccgaagagatccaatgtcgactac
tttgacgagacattatctccccaacagcgagtacacaagagctggaagctgtggtcgttc
tacgtcgacctcgtcgagagcgtcagcaccctggaggaaaccaagaagatttacgaaaga
atattcgagctccgcatcgccacgccccagactgtggtcaactacgccaacctactcgag
gagcacaagtactttgaagagtctttcaagatctacgagcgcggccttgatctcttctct
taccccgtagcctttgagctatggaatctctacctaaccaaggccgtcgaccgcaagatc
agcatcgagcgtctgagagatctctttgaacaagccgttgaagactgcccggccaagttc
gccaaggtgatctacctcatgtacggcaacctagaagaggagcgcggtctagcccggcac
gcgatgcgcatttatgagcgggcaacgcgtgccgtgtcggacgaggacagggcggacatg
tttaatttctatattaccaagtcggcctctaatttcggtctcccatccacgcgccctatt
tacgagcgcgccatcgccaccctccccgacaacgaagcaaaggacatgtgcctcaaattc
gcggacatggaaaaacgtcttggggaaatcgaccgtgcaagggccatctacggccatgga
tcccagttttgcgatcccaggacaaaccctgggttttggcaaaaatgggagcagtttgag
gtgcaacatggcaatgaggacacgttcaaggagatgctgcggatcaagcggtcggtgcag
gcgcagtacaacaccgatgtcaactttattgcctcgcaggcgctggcgagagcacagcag
gccaagaacggcgaaggaggaggagaggttgatcaggaggtggcggacgcgatggagcag
ctggaacggcaggctcgtgccccggcgggatttgttgcggcgagcgaggggatcaagggg
agtgtggttgctcccaaggtggtcgaggtggcaaacccggatgctatcgagcttgatgat
atggaatga
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