Podospora pseudoanserina: QC764_604820
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Entry
QC764_604820 CDS
T09816
Name
(RefSeq) hypothetical protein
KO
K14328
regulator of nonsense transcripts 3
Organism
ppsa
Podospora pseudoanserina
Pathway
ppsa03013
Nucleocytoplasmic transport
ppsa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppsa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
QC764_604820
03015 mRNA surveillance pathway
QC764_604820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsa03019
]
QC764_604820
Messenger RNA biogenesis [BR:
ppsa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
QC764_604820
mRNA cycle factors
P-body specific factors
QC764_604820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
87969856
NCBI-ProteinID:
XP_062797208
LinkDB
All DBs
Position
6:complement(726607..729128)
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AA seq
687 aa
AA seq
DB search
MSTPQLLSRKANGTTAVAQSSADSPKATKTKAPANGEKVVIRRLPPGLTEAEFHAILGDE
WKLGDGKVDWYKWYPGKVSQHPSKPSTPARAYLHVSQRDQLPELLRKVQEAKWEDAKETY
NDPALVAPPTVEFSVYKKIPSEKKRVDGRQGTIDQDPEFMAFLESLASPDGNKEGVTAEP
EPEEEPEKTTTTPLIEYLKERKAAKAKEIAAAKIAMKHARTESLTGKGKASATSAEEPKR
RSTRDRESRTERERATEKAPERPRESVKILTKKAVAAAEAAAEAAKVAAIQKSTQSSAPS
ASSEAPSKSRRAGIAAAARILQRDLGLSSSNAHRKARMDAAKADADSKGSAAKGPAKENV
PIAPEPAPPAPPAQPSSSAPPKSQQQQQQQQQQQQQQQQPAASSNRSRNRRRGGGDEGGK
SKGDNKADKQADTTPPAPAPAPAKPVLLLKKRETPQAQRQQPSAPATPVSAMASQSTPTT
AAPSQPAAPKNASAKQGGGGRESKKNAGPAPSSGATRAFIKHANHSQGVTEALLKDALSA
YGTVTSVDIDRKKGFAYVDFTDHAGLAKAMAASPVTIAQATVQVLERKDMTAKKGGQSSG
STQGKNAAASASATTASTPTPAPAPAAASNSTAPEKPAGEQQPKESRRNPRRSKRGGRDN
KDKDGKEGGGKGGGVGGSAPAAAAASC
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactccacagttgttatcacgaaaggcaaacggcactacagcagtcgcccagtct
tcagccgattccccaaaagcaaccaagaccaaggcacccgccaatggagaaaaagtcgtg
atccgtcgcctaccaccaggtcttaccgaagcagagttccatgccattttgggcgatgaa
tggaaactcggagatggcaaggtcgactggtacaagtggtatcctggtaaggtctcgcaa
cacccttcaaaaccgtcgacaccagctcgggcatatctccatgtctcgcagagagatcag
ttgccagaactcctccgcaaggtacaagaggccaagtgggaagatgcgaaggagacctac
aacgatccagcccttgtcgctccaccaaccgtcgagttctccgtctacaagaagattccc
agcgagaagaagcgtgtggacggccgacaagggaccatcgatcaagacccggagttcatg
gcttttctggagagccttgcaagcccagacgggaacaaagagggtgtcactgctgaaccg
gagcccgaagaggaacccgaaaagaccaccacgacacctctgattgagtatctgaaggag
aggaaggctgccaaggcaaaggaaatcgctgctgctaagatcgcaatgaaacatgccaga
acggagtcactgactgggaagggcaaggcatcagctaccagtgctgaggaacccaagagg
agaagcacccgggacagagagtcgagaaccgaaagggagagggccaccgaaaaggcaccc
gagaggcccagggagtcggtcaagatcttgaccaagaaggctgttgccgctgcagaggct
gccgcggaggctgctaaggtggcagccatccaaaagtcaactcagtccagcgcaccatcc
gcatcttcggaggctccatcgaagagccgtagggcaggcattgctgctgctgcgcgtatc
ctacagcgtgacctgggtctgagctctagcaacgctcaccgcaaggccagaatggatgca
gccaaagcggatgccgatagcaagggcagtgctgcgaagggaccagcgaaggaaaatgtc
ccaatcgctcctgagccagcaccacccgcccctcctgctcagccgtcgtcatctgctcca
cccaagtcacaacaacaacaacaacaacaacagcagcagcagcagcagcaacagcaacca
gcagcttcttccaatagatctcgcaacagaagacggggcggcggtgatgagggtggaaag
tcaaagggggataataaagccgacaagcaggccgacacaacgcctccggcaccagcacct
gcaccagctaagcctgtgcttcttctcaagaaaagagagacaccacaggcccagcgtcag
cagccatcagcccctgccactcctgtttcggctatggcatcacagtctacaccgacgaca
gccgcaccctcccaacctgctgcaccgaaaaatgcatcagcaaagcaaggcggtggcggc
cgagaatccaagaagaacgccggacctgctcccagttcaggcgcgacacgagctttcatt
aagcatgcaaaccactcacagggtgtcaccgaggcgctgctcaaggatgccttgtcggcg
tatggcactgttacttcagtggatattgatcgcaaaaaggggttcgcgtatgtcgatttc
acagaccatgctgggctcgccaaagctatggccgccagcccggtcacgattgcgcaggct
acagtacaggtgctggagaggaaggatatgacggctaagaagggggggcagtcgtcgggt
tctacccaggggaagaatgccgctgcctctgcttctgctactactgcgtctacgccaacc
ccagctcctgcgccggcagctgcgtcgaacagtaccgcgccggagaagcctgctggggag
cagcaaccgaaggagagcaggcgtaacccgcgtcggagcaagcgtggtggtcgggataac
aaggataaggatgggaaggagggtggtggaaagggtggtggtgtaggcggctctgcacct
gctgccgctgctgcttcttgttaa
DBGET
integrated database retrieval system