Podospora pseudoanserina: QC764_608390
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Entry
QC764_608390 CDS
T09816
Symbol
PAT1
Name
(RefSeq) DNA topoisomerase 2-associated protein pat1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ppsa
Podospora pseudoanserina
Pathway
ppsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QC764_608390 (PAT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsa03019
]
QC764_608390 (PAT1)
Messenger RNA biogenesis [BR:
ppsa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
QC764_608390 (PAT1)
mRNA degradation factors
5'-3' decay
Decapping complex
QC764_608390 (PAT1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
YJR039W_M
Motif
Other DBs
NCBI-GeneID:
87970188
NCBI-ProteinID:
XP_062798045
UniProt:
A0ABR0HV12
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Position
6:complement(3353434..3356941)
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AA seq
840 aa
AA seq
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MSFFGFNNGHNTAATGFSQAHNPFQGLSGRDDDGDALEFEDTYDGLGDQLEETKDAYNDD
TFGDTSDIAAAPVGKDFDFFSQTAKVQNAIEEEHYLFNRQQPPARSAQPAQPVQQMSYGQ
PSLQSAASYGYTSQGHYRTGYEKYSNDKYNNNEPVPELQVDASLWGVAPKKPAQPAPQVS
QQAAQSSSAPSRKILSLEEVEAQMRAQAQAKAAQATPSPAPHAQGPSQIPYDPAIQFAQP
AQQQFVPPVDHTRQALPIHVLQRPQSTQAPSPQPPVQPAAHQRQPSSTSVQPTQILQNPN
RLSGDAARMGMQQHPTPPVSGPSAPPTQPAHRQQGSFGRQPNIITHPSQVSQLTEEQRAA
YMEQEAKRAKRNHKIYLMSRDNGVMTPQDKSFVTRIQLQQLVAATGNPNEHGSDESLAED
FYYQVHSSLQGGQRQHPNQPLNNFAQTYLFQTGNRSGHMRRHRGPENHMQRMEQQVQRAV
EAAKNKPKNKQLVIEGSLGKISFSNAKTPKPLLNIKRTESTDDANRPSSAHKVVSAGDRK
SDLRTIERIYTILMKMEDHDRVLPPPPTSDTDAEGHQRGMRWSNEAQALNQDLWSALRVY
DEPQPGHPHPFVALLSYNKGMKAMNRIFRHLSQEQRTTILTLVIVNLDKLDVVVNAQVTS
AAVQLTAAMRENIHIFSNAVMNTLFNFLNELDLDIVAGLLSILSKQRLDIIAKSRIGASM
ITMILSRAEIIKVNVGNTHPSWQAWDMCHTDFFDRLEPTLPYMFPGSVNTADDIYVWQLL
AALGIGASPEQQQRLVLAVKDRVMDTVALSKTLPADMGAQRLQNVNLFMRSIGLDVELLQ
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttctttggattcaataacggccataacacggcggccactggcttttcacaggcc
cacaatcccttccaaggcctttctggccgagacgacgatggcgatgctttggagtttgaa
gacacctatgacgggcttggagatcagctcgaagaaacaaaggacgcctacaacgatgat
acttttggggatactagcgacatagctgccgcgcctgttggcaaggattttgatttcttc
tcgcaaactgccaaggttcagaatgccatcgaggaggaacattatcttttcaaccgtcag
caaccgccggcccggtccgcccagcctgcccagcctgtccagcagatgtcttacggtcag
ccgtctcttcaaagcgcagcctcgtacggctatacatctcagggccactatcgcaccggc
tacgagaagtattcaaatgacaagtacaacaacaacgagccggttcccgaattgcaggtc
gatgcctctctctggggtgtggcgccgaagaagccggcacagcctgcccctcaggtctcc
cagcaggctgcccagtcgagttccgcgcccagtcgcaagattctaagcttggaggaagtc
gaggctcaaatgagagctcaggcccaggccaaggctgcccaagctacgccatctccggct
cctcatgctcaaggcccttcgcaaatcccttatgacccggccattcaatttgctcaaccg
gctcagcaacaatttgttcccccggttgatcataccagacaagctctcccgattcacgta
ctgcaaagacctcagtccacccaagcgccttcgccccagcccccggtccaacctgctgct
catcaacggcaaccgtcatcgacttctgttcagccaactcaaatcttgcagaatccgaat
cgtctatctggagatgccgctagaatggggatgcagcagcatcccacgcctccggtatca
gggccttctgcccccccaactcaacccgcccatagacagcagggttctttcgggagacag
cccaacatcataacgcatccatcccaggtgtcccaacttaccgaagagcaaagggccgcc
tacatggaacaggaggctaagcgtgctaaacggaaccacaagatctacctgatgtctcgt
gacaacggtgtcatgacaccccaggacaaaagcttcgtcacacgcattcagcttcagcag
cttgttgccgccactggcaatccgaacgagcacgggagtgatgagtcgcttgccgaagat
ttttactatcaagttcatagctcgcttcagggcggtcaaaggcaacaccccaaccagccg
ctcaacaactttgcacagacctatcttttccagactggcaacaggtcgggtcacatgcgt
cgccaccgaggccctgagaatcatatgcagcgtatggaacagcaggtccagcgagctgtt
gaagctgccaagaacaagcccaagaacaagcaactcgtcatcgagggaagtctgggcaaa
atttcattcagcaacgccaagacacccaagccgctgcttaacatcaagcgcacagagagc
accgatgatgccaaccgtcctagcagtgcgcacaaggtcgtcagtgccggcgatcgtaag
agtgatctgcgcaccattgaacgcatctataccatactcatgaagatggaagatcacgac
cgcgtcctgccacctccccctacaagcgacaccgacgctgaaggtcaccagcggggcatg
cgttggagcaacgaagcccaagccctgaaccaggatctgtggtccgcgctgagagtctac
gatgaacctcaaccgggacacccccatccttttgttgcgcttctgtcatataacaagggt
atgaaggctatgaacaggatcttccgccatctcagccaggagcagcgcaccaccattctc
accttggttatcgtcaatcttgacaagcttgatgttgttgtcaacgcccaggtgacgtcc
gccgcggtccagctgacagctgcaatgcgcgagaatattcacattttctccaacgccgtc
atgaatacgctcttcaacttcttgaacgagctcgatcttgacatcgttgccggtctgttg
tctattctttccaagcaacgattggacattattgcaaagagtcgcatcggagcttcgatg
atcaccatgatcctgagccgcgccgaaattattaaggttaatgttggaaacacccatcca
tcctggcaggcttgggacatgtgtcacactgactttttcgatcgtctcgaacctacgctt
ccctatatgtttcctggctctgtgaacaccgccgatgacatttacgtatggcaactgctc
gcggcgcttggcataggagctagccccgagcagcagcagaggcttgtacttgctgtcaag
gaccgcgtcatggatacggtcgctttgtcaaagacactccccgcagacatgggcgcccag
cgtctccagaatgtgaacctcttcatgcgcagcattgggttggatgtcgagctgctacag
taa
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