Paenibacillus psychroresistens: EHS13_12410
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Entry
EHS13_12410 CDS
T06328
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppsc
Paenibacillus psychroresistens
Pathway
ppsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHS13_12410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsc03019
]
EHS13_12410
Enzymes [BR:
ppsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EHS13_12410
Messenger RNA biogenesis [BR:
ppsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EHS13_12410
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QGQ95628
UniProt:
A0A6B8RJW4
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All DBs
Position
2788940..2790202
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AA seq
420 aa
AA seq
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MTFNDLNIIPEILKALSKENYTTPTPIQEQAIPAVLAGRDLLGCAQTGTGKTAAFAVPII
QLLMEQPRKPNIQGRVRSLILTPTRELALQIDENIRAYSQFTDLRCSAIVGGVSQKAQER
ALNKGADIIIATPGRLIDLIGQKRIDLQYVSILVLDEADRMLDMGFINDVKKIITKMPSK
RQTLFFSATMPPEISKMVKTLLVNPVKVEITPVSSTVDRIQQSLYLVDKANKQNQLNHLL
QDKSIVSALVFTRTKHGADRVTKELAKVKISAQAIHGNKSQSARQNALSNFKSGVTRVLV
ATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGVAISFCELEEIPFLKDI
EKLIGKNIPEVTDHLYPLLGAVPARLEVKQAAAVIKPVKPKANPARKPKAEWFSKSRTSK
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaacgacttaaatattataccggaaattctaaaagcattaagcaaagaaaac
tatactacacccacacctatacaagaacaagctatacctgctgtgttagctggccgagat
ttgcttggctgtgctcaaacaggaacgggaaagacggcagcattcgctgtgccaattatt
cagttattaatggaacagcctaggaagccaaatatacaaggtcgtgttcggtcattgata
ttaacaccaacaagagagctcgcattacagattgatgaaaacattcgtgcgtacagccaa
ttcactgatttgagatgttcggctattgtcggcggcgtttcacaaaaagcacaagagcgg
gcactcaataaaggcgcggatattattatcgcaactccaggccgacttatcgacttaatt
ggtcaaaagcgaattgatttacaatacgtctctatcttagttctagatgaagctgacaga
atgctcgatatgggcttcatcaacgatgtgaagaaaatcatcactaaaatgcctagcaaa
cgacaaactttattcttctcggccacaatgccgccagaaatctccaaaatggttaagaca
ctgcttgttaaccctgtaaaggttgaaattaccccggtatcttcaacggtggataggatt
caacaatctctttacttagtcgataaggcaaataagcaaaatcaattgaatcatctttta
caggataaatcgattgtatctgcattggtatttacacgtaccaagcatggcgctgatcgt
gttactaaagagttagctaaagtgaaaatttctgcccaagctattcatggcaataaatct
caatcagcccgtcaaaatgcattaagtaatttcaagagtggcgtaacaagggtgttggta
gctactgatatcgctgctcgagggattgatatcgatgagctttcccatgtgattaacttt
aatcttcccaatatcccagaaacctatgttcatcgtattggtcggacaggcagagcggga
ttaagcggggttgcaatctccttttgcgagcttgaagaaattccatttcttaaggatatc
gagaaattgattggaaagaatattcctgaagttaccgaccatctgtatccgctgctaggt
gcagttcctgcaaggctagaagtaaagcaggcagcagccgtaattaaaccagttaaaccg
aaagctaacccagctcgcaaacctaaggccgaatggtttagtaaaagtagaacgagtaag
taa
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