Podospora pseudocomata: 87906528
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Entry
87906528 CDS
T09797
Symbol
SKI2
Name
(RefSeq) Antiviral helicase ski2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
87906528 (SKI2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsd03019
]
87906528 (SKI2)
Enzymes [BR:
ppsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
87906528 (SKI2)
Messenger RNA biogenesis [BR:
ppsd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
87906528 (SKI2)
mRNA degradation factors
3'-5' decay
Ski complex
87906528 (SKI2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AbiEi_3
Death_3
Ssol_1539-like_2nd
6PF2K
Motif
Other DBs
NCBI-GeneID:
87906528
NCBI-ProteinID:
XP_062749743
UniProt:
A0ABR0GYS6
LinkDB
All DBs
Position
1
Genome browser
AA seq
1328 aa
AA seq
DB search
MIWRGKSMKLRPCCLPGWSRPCLGTTPHLELVDETITLPLPPEMATDLQDAIQRLHLDDN
STFDAIDDILDHKVVKPPKKQDPDELRAELERKFLSPSTTFSDEWLDKLQQRWDTPIDYS
LLFNIAPSQTRTVTRFVRHGLEGRVTGYRNVTVPASHATAKNSTSMTRKPASRSEFVRGG
AGFFPFAPGGLEGIESTAALEDQLRASAAIEEADSRKKLERVIKLGSGGLLEVAPGVSRG
IDFTKRRKVADEEAEKQAKEVEEVLDQEPEAAPDQEDEDADKAPTNGASDESEEEEDLED
IDSILPVEFPALEPHGKLAASSARKAGREWAHMVDINRPMPNFRELVPDPAREWPFELDN
FQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYTSPIKALSNQKFRDF
RQTFDEVGILTGDVQINPEASCLIMTTEILRSMLYRGADIIRDVEFVIFDEVHYVNDFER
GVVWEEVIIMLPEHVSLILLSATVPNTHEFASWVGRTKQKDIYVISTPKRPVPLEHYLWA
NKNIYKIVDSEKRFVEKGWKDANAAMQGKDKPPKAIEAAPARGGGNQRGGGRGGQQRGGN
QQRGGGRGGGQQQRGRGGPPRASHNPGHMGRTGRPGGFTSAAQDKNLWVHLVQFLKKQTL
LPACIFVFSKKRCEENADALSNQDFCTAQEKSAIHMTIEKSIARLKPEDRTLPQIVRLRE
LLSRGIAVHHGGLLPIVKELVEILFAQTLVKVLFATETFAMGLNLPTRTVVFSGYRKHDG
HSFRNLLPGEYTQMAGRAGRRGLDTVGSVIIVPPGGDEAPPVTDLRQMILGEPSKLRSQF
RLTYNMILNLLRVEALKIEEMIKRSFSEHATQQLLPEHEKAVKLSEADLAKVKRDSCQIC
DVHMDDCHQAGEDFKQLTEELYRALLNIPIGRKMFTPGRLIVWMKEGVRTPGLLLAEGAS
TKSSATVPMLHVLEIRTNREIRNDTDLLPFVPSLRKYYTSLPQAKKHIGTKTLHIPLSDL
VCLTKYVTKGILPDIFGSGEGYQKAKDKLQTICRTWASDHWDEMDLGRIKSLAIHDIINK
RREAEVKLTKSAAPLCTFFLKHYAMCHDQWLIKTNIDQLRQALSNQNLQLLPDYEQRIQV
LKDLRFIDEETRIQLKGKVACEIHSGDELVLTELILENVLADYEPAEIAALLSAFVFQEK
TESIPKLTHNLEKGMKTIVELSEKVNAVQTLHQVIQTSEESNDFVSKPRFGLMEVVYEWA
KGVSFKNITNLTDVLEGTIVRTISRLDETCREVKNAARIIGDPELYQKMTVAQELIRRDI
TAVASLYM
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atgatttggcggggcaagtcgatgaagctgcgaccttgctgtcttccaggctggagtcgt
ccatgtttgggcacaacaccacaccttgaactcgtggacgagaccatcacactaccatta
ccgccggaaatggcgaccgatctccaagatgccatacaacggcttcacctggacgacaat
tccacattcgatgcaattgacgacatccttgaccacaaggtagtcaagccgcccaagaag
caagaccctgatgagctgcgcgccgaactcgagcggaaattcctgtcgccatcgaccaca
ttctcggacgagtggctcgacaagcttcagcaacgatgggacaccccgattgactactcc
ctgctcttcaacattgcgcccagccagacccgcacagtcacccgcttcgtgcgtcatggg
cttgagggtcgggtcacaggctacagaaatgtcactgttccggcctcgcatgccacggcg
aagaacagcacgtccatgactaggaaacccgccagcagatctgaatttgtccggggtggc
gccgggttcttccctttcgctcctggtggtttggagggtatcgagtcaacagctgcgttg
gaggatcagctgcgggcttcggctgccattgaggaagctgacagcaggaagaaactagaa
cgtgttatcaagcttggatccggtggtctgcttgaggttgctccgggtgtctccagaggt
atcgactttacgaaaaggagaaaggttgcggatgaagaggcggaaaaacaggcgaaggaa
gtcgaagaggtcttggatcaggagcccgaggcagctcctgaccaagaggatgaggacgcc
gacaaagccccaacgaatggtgcttctgacgagagcgaggaagaggaggatctcgaggat
atcgactccattcttccagtggagttcccagctctggaaccccatggcaaacttgcagca
tccagcgctagaaaggcaggccgcgaatgggcgcacatggtggatatcaacagaccaatg
cccaacttccgggagctggtgccagatccagccagagaatggccattcgaactcgacaac
ttccaaaaggaagccgtctatcatcttgaaaatggcgactcggtgttcgtcgcagcccat
acttctgcaggtaagacagtggtggctgaatacgccattgctcttgcggcaaaacacatg
acgaaggctatttacacatccccgatcaaggcgctcagcaaccaaaagttccgcgacttc
agacagacgttcgacgaggttggtattctgactggtgatgttcagatcaacccggaggcc
agctgtctcatcatgactacggagattctgcgcagtatgctttaccgtggagccgatatc
atccgcgatgtcgagttcgtcatcttcgacgaggtccactatgtaaacgactttgagcgt
ggtgttgtctgggaagaggtcatcattatgctaccagagcatgtgtccttgattcttctt
tctgctaccgtccccaacactcatgagttcgcctcgtgggtaggacgcacaaagcagaag
gatatttacgtcatttctacgccgaagagacctgtgccgttagagcactatctctgggcc
aacaaaaacatctacaagatcgtcgactctgagaagaggttcgtcgagaaggggtggaag
gatgcgaatgcggctatgcagggcaaggacaagccaccaaaggccatcgaggccgcacca
gctcggggtggtggcaaccagagaggtggtggccgtggaggccagcaaagagggggcaat
cagcaacgtggcggcggtcggggtggcggacaacagcagcgtgggagaggtggaccacca
cgcgcgagccacaatcccggacatatgggccggacaggccgaccaggagggtttacatct
gctgctcaggacaagaacttgtgggttcacctcgtccagttcctcaagaagcagactctt
cttccggcctgtatcttcgtcttttccaagaagagatgcgaggagaatgcagatgctctg
agcaaccaggacttctgcaccgctcaagaaaagagtgcgattcatatgacgattgagaag
tcgattgctcgtttgaagcccgaggacagaactctgccccaaattgtgcgccttcgagag
ctgctctcgcgaggtatcgcagtccatcatggtggtttgctccctatcgtcaaggagttg
gtggagattcttttcgcccagactctggtcaaggttcttttcgcgactgagaccttcgcc
atgggcctgaacttgcccacgagaacagttgtcttctcgggataccgcaagcatgacggc
cattctttccgcaatctccttcctggtgaatacacacagatggctggtcgggccggtaga
cgcggtctcgatactgtcggttccgtcatcattgtgcctcctggtggcgatgaagccccc
cctgtcactgatctccggcaaatgattctcggagagcctagcaagctccggtctcaattc
cgcctgacctacaatatgatcttgaacctactacgcgtcgaagctctgaagatcgaggaa
atgattaagcgtagtttctcagaacacgccactcaacagctcttacccgagcacgagaag
gcggtcaaactatccgaggcagatttggcaaaggtcaagagggattcttgtcagatttgt
gacgttcatatggacgactgtcaccaggcgggtgaggacttcaagcagttgacagaggag
ctgtatcgcgcgttgctgaacattccgattggccggaagatgtttacgcctggtcgtctc
atcgtctggatgaaggaaggtgtccgcactcctggtttgttgctcgctgaaggcgccagc
accaaaagcagcgcgacggttccaatgttgcatgttctcgaaattaggacgaatcgagag
attcgcaatgacacggacttgctgccctttgtgcccagtctacgcaagtactacacgtca
ctcccccaggccaagaagcacatcgggaccaagacattgcacatccccctgagtgacttg
gtatgcttgacaaagtatgtcaccaagggcatcctgccagacatctttggcagcggcgaa
ggctaccaaaaagccaaggacaagcttcaaaccatctgccgcacctgggcctctgatcac
tgggatgagatggatctgggtcgcatcaagagcctggctattcacgacatcattaacaaa
cgccgtgaggcggaggtcaagctcacaaaatccgccgctccgctttgcacgttcttcttg
aagcactacgccatgtgccacgatcagtggctcatcaagaccaacatcgaccagctccgc
caggccctctccaaccaaaacctgcagctcctccccgactacgagcagcgtatccaggtt
ctcaaggaccttcgcttcattgacgaagaaacccggatccagctcaagggcaaggtagcc
tgtgagattcactctggcgacgagcttgtccttaccgagctcatcctcgagaacgtcctc
gccgactacgagcccgccgaaatcgccgctctgctctcggcgtttgtctttcaggagaag
acagagtccatcccaaagctgacgcacaacctagagaagggcatgaagactattgtcgag
ctctccgaaaaggtcaatgcggtgcagactctccaccaggttatccagacatcagaggag
tccaacgactttgtcagcaagcctaggtttgggttgatggaggtggtgtatgagtgggcc
aagggtgtcagcttcaagaatatcacgaatctgacggatgtgttggagggaacgattgtg
cggacgatttcccggttggatgagacgtgcagggaggtgaagaatgcggctaggattatc
ggtgatcccgagttgtatcagaagatgacggtggcgcaggagttgatcaggagggatatt
actgctgtggctagtctttacatgtaa
DBGET
integrated database retrieval system
