Podospora pseudocomata: 87911204 Help Entry 87911204          CDS       T09797                                  Symbol SKI3 Name (RefSeq) Superkiller protein 3   KO K12600   superkiller protein 3 Organism ppsd  Podospora pseudocomata Pathway ppsd03018   RNA degradation Brite KEGG Orthology (KO) [BR:ppsd00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     87911204 (SKI3)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ppsd03019]     87911204 (SKI3) Messenger RNA biogenesis [BR:ppsd03019]  Eukaryotic type   mRNA degradation factors    3'-5' decay     Ski complex      87911204 (SKI3) SSDB OrthologParalogGFIT Motif Pfam:  TPR_19 TPR_2 TPR_16 TPR_22 TPR_1 TPR_CcmH_CycH TPR_8 TPR_14 TPR_17 TPR_12 CFAP70_mid_TPR CFAP70_TPR_C TPR_11 TPR_7 TPR_6 TTC22_N ARM_TT21_C RMD1-3 ARM_TT21_5th TPR_9 T7SS_EccA1_N TPR_Psidin_N CABIN1_N PPTA TPR_Slam TPR-S HIR3_bundle ARM_TT21 CNOT10_TPR RPN6_N Motif Other DBs NCBI-GeneID:  87911204 NCBI-ProteinID:  XP_062742629 UniProt:  A0ABR0GD26 LinkDB All DBs Position 5:<3679605..>3684212 Genome browser AA seq 1435 aa AA seqDB search MVNLIKRHSINKHTKAMLKSVNDFIKQSKWDDAREAANEVLQRDPKNYHAHIFLAFALDK KNMLEDAENTYLAATNIKPGDTQAWQGLIRLYQKQGNKKLKQYKHAAIKLGEIFRDTNEM FKFQDVVDKFVDHARTQGERLQYVDALDIQLPGSPLYEALEGRVPHPAKTYEIQAKIVEP EEKKRINTLIGERRTRIGARVSEVTLEVKREVYRQSKLGHIYRQLIDWTADDELRRTCEE KLLQYCYDRLLAWPPGEEKQQEMEVVRKLANDMVIIRHPFKFAWDIALNWQDHKEIKEWD VTILRQYCSFFPDSDLNRVIMGFLTSDISPFPKETPAQNDVTADGEPEDESEDDDAGGVP TTYVPLTEEDRLLMMTEGISSGDSLFAYRLMGEYYQHLEEHESNVELMRKAIDLLKTERT KTGLAFRNTGDAYSLYLGTALVFYQSPRHHQEAKSLFDGVLAHDPTSTPAMIGVGLIYEE EEEYDEAVGFLERALLGDPTNLRVKTEAAWVKALKGDFAAAKAELDACMPLLTEKGQNNK ELLSQTKYRLGYCIWNLETSRSARKSRSGAYNHFLESLKSNLNYAPAYTILGIYYADYAK DKKRARRCFQKAVELSPSEVLSAERLARSFADDGDWDRVELVAQRVVDSGKVKPPPGSKR KGISWPFSALGVAELNKQDYHKAIVSFQAALRISPNDYHSWVGLGESYHGSGRYIAATKA LLNAQKLEESPDVDITGQETWFTRFILAEVKRELGDFDDAIDLYKQVLEDRPEEDGVAIS LMQAMVDNALVSLDKGFFGKSIDHAVSALRFAVETSAAIKDTFNFWRAIADACSLFTSVQ GRLSEFPRELVQGLLGSDEAAPEYQVLKDIDGVGTAVVSTNGIFHDNEKMGIDLTRAMHA TILAHKRAVHLSANDIHAQAVAFYNLGWAEYRAHSCLPAHLRKKATRYLKAAISCFKRAI ELEAGNSEFWNALGVVTSTVNPSVSQHSFVRSLHINERGAHSWTNLGVLALLQGDLQLAN EVFTKAQSADPDFAHAWLGQGLVALLLGDQKEARGLFIHSMDISEASSLATRRLYSVSMF DHILSSPSDLPITSLVQPVLALGQIQGLKPQDLAYGHLSALFQERTQEYQRAAHNLENIC TQAEAEYEVTESPQALKHFSIAKTDLARALLAQGLNVEAIEAAEMAIQLSSDESDSELTA GERKRVRLSAHVSMGLAQYHLDYVDDAVSSFEQAIQESDGNPDVACVLAQVLWATGKDDA RERARDVLFEVIEQHPSHVQSVCLLGVIALLDKDDESLEAVVSELQNLRSGDEGVSAAEQ SQLGEVLKAVAALGAGGGGGEEGQAQADVMFHPYLPHGWAELAGLEGTAGDGEGAAEMAL RVAIKGVAPRGDLPAEELARAYAGTGKVMDAQTAVMVAPWEGAGWRSLGDAIIRS NT seq 4308 nt NT seq  +upstreamnt  +downstreamnt atggtgaacttaatcaaaagacactctatcaacaaacacaccaaggccatgttaaagtcc gtcaatgacttcatcaaacagtcgaaatgggacgatgccagagaagccgccaacgaggtc ctccaaagggaccccaaaaactaccatgctcacatctttttggcttttgcgctggacaag aagaacatgctcgaggatgccgagaacacctatcttgccgccaccaacatcaaaccaggc gacacccaggcctggcaaggcctgatcaggctctaccaaaagcagggcaacaaaaagcta aagcagtacaaacatgctgccatcaagcttggcgaaatctttcgggacaccaatgagatg ttcaagtttcaggacgttgtcgacaagttcgtcgaccatgcacgtacacagggcgaacgg ctgcagtacgtcgatgccttggacatccaactgccaggaagccctctgtacgaggcccta gaaggccgtgtgcctcaccctgccaagacctatgagattcaggccaagattgtcgagccc gaggagaagaagcggataaacacgcttattggcgagaggcgcaccagaatcggagcccgc gtcagcgaagtgactttggaggtcaagagggaagtctaccgccaaagcaaactcggccac atctacagacagctcatcgactggactgccgatgacgagctccggcgcacatgcgaagaa aagttgcttcagtattgttacgaccggctcttggcttggcctcctggggaggaaaagcaa caagagatggaagttgttcggaaactggcaaacgacatggtcatcattagacacccattc aagtttgcctgggacattgctctcaactggcaggaccacaaggagatcaaggaatgggat gtcaccattctcagacaatattgctcattcttcccggacagtgacctgaacagagtcatc atggggtttcttactagcgacatctcgccattccccaaggaaacaccagcgcaaaatgat gtcacagcggatggtgagccagaggacgagagcgaggacgacgatgctggaggtgtgccc acaacatatgttcctctcacagaggaggaccgactgttgatgatgacggagggcattagc tctggtgattcgttgtttgcgtaccgactcatgggcgagtactaccaacatctcgaggag cacgaaagcaacgtcgagttgatgcgtaaagcaatcgaccttctcaaaacagagcggacc aagacaggcctggcgttccggaatacaggagatgcctactctttgtatctcggcaccgca cttgtcttttaccaatctcctcgtcaccatcaagaagccaagagcttgttcgatggtgtt ttggcgcacgatcccacatccaccccagccatgattggcgtgggtctgatttatgaggaa gaagaggagtatgatgaagcagttggctttttggaacgtgctctgctgggcgacccaacc aatctccgtgtcaagacggaggctgcctgggtcaaggctctgaaaggagactttgctgcc gccaaggccgagctcgacgcctgcatgccactgctgaccgagaaggggcagaacaacaag gagttgctctcgcagacgaaatatcgtctcggttattgcatttggaacctcgaaacatcc aggtctgccaggaagagccgcagcggtgcctacaatcacttcctggagtccctcaagagc aatctcaactacgccccggcctacactatcctcggtatctactatgcagactatgccaag gacaagaagagagctcggagatgtttccagaaggcagtcgagctctctccatctgaagtt ttgtctgcagagagacttgccaggtcttttgctgacgacggcgactgggaccgtgtcgag ctcgttgctcagcgagttgttgactcgggcaaggtcaagccgccgcctggatccaagcgc aagggtatcagctggcccttttctgctctcggcgtggccgagctcaacaagcaggattac cacaaggccattgtttctttccaggctgccctcagaatatcaccaaatgactaccactct tgggttggtctcggcgagagctaccatggctcaggtcggtatatcgctgctaccaaagct cttctgaatgcccagaagctggaggagtcacccgatgtagatatcacaggacaagagacg tggttcaccagattcatcctcgccgaggtcaagcgtgagcttggcgactttgatgacgcc attgacttgtacaagcaggtcttggaagatagaccggaggaagatggtgtcgccatttcg ctgatgcaagcgatggtggacaatgctctcgtcagtttagacaagggcttttttggcaag tctatcgaccatgctgtgtcagcgcttcggtttgcggttgagacttctgcggccatcaag gacactttcaacttttggagagcgattgccgatgcctgctccctcttcaccagcgtccaa ggccggttgtcagagtttcccagggagctggtgcaagggctgctcggaagcgacgaggct gcccccgagtaccaggtgctgaaggatatcgatggagtcggcaccgccgttgttagcacc aacggcattttccatgacaatgagaagatgggaatcgacttgaccagagctatgcatgcc accatcctggcacacaaacgcgccgttcacctgtctgccaacgacattcatgcccaggcc gtggcgttctacaacctgggatgggccgagtacagagctcattcgtgtcttccagctcat ctgaggaagaaggctacgaggtatctcaaggctgctatttcttgcttcaagcgggccatt gagctcgaggctggcaactctgagttctggaacgctctcggagtggtcaccagcactgtg aacccatccgtttcgcaacactcgtttgtgcgcagcctccacataaacgagagaggtgct cactcttggaccaatctgggtgttcttgcactccttcaaggcgacctccagcttgccaac gaggtctttaccaaggcccaatctgccgatcccgactttgcccatgcctggcttggtcag ggtcttgtcgctctgctcctgggtgatcagaaggaggcccgcggcctgttcatccactcg atggacatttctgaagcatcctccctcgccaccagacgtctgtattccgtctccatgttt gaccacatcctgtcatccccatccgaccttcccatcacttccttggtccagcccgttctc gctcttggccaaattcagggcctcaaacctcaagatctggcctacggtcacctctctgcc ttgttccaagaacgaacccaagaataccaacgggccgcccacaacctcgaaaacatctgc acccaagccgaagcagaatacgaagtcaccgagtcccctcaagcactcaagcacttttcc attgccaaaaccgacctcgcccgcgctctgttggcgcaaggcctcaacgtcgaagcaatc gaagcagctgaaatggccattcaactctccagcgacgagtccgacagcgagctcacggcc ggggaacgtaagcgggtgcgcctctctgcgcatgtgtctatgggattagcgcagtaccac ctcgactacgtcgacgacgccgtcagctcctttgagcaggcgattcaagaatcggacggc aaccccgacgttgcctgtgtcctggctcaggtcctttgggcaaccggtaaggatgacgcg cgtgagagggcgagagatgtcctgtttgaagtcattgagcaacaccccagccacgtccag tcggtctgcttgctgggcgtgattgcgctgttggataaagacgacgagtcgcttgaggct gtggtgtcagagctgcagaatcttcggtcgggtgatgagggggtgtctgctgcggagcag agccagctgggcgaggttctcaaggctgtggctgcgctgggcgctggtggtggtggtggt gaggagggccaggcgcaggcggatgtcatgttccatccttacttgccgcatgggtgggcg gaacttgctgggctggaggggacggcgggggatggggagggggcggcggagatggcgttg agggttgcgatcaagggggttgcgccgaggggggatctgccggccgaggagctggccagg gcttatgccgggacgggcaaggtgatggatgcgcaaacggcggtgatggtggcgccttgg gagggagcggggtggaggagtttgggggatgccatcattcgttcttag

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