Podospora pseudocomata: 87911272
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Entry
87911272 CDS
T09797
Symbol
FEN1
Name
(RefSeq) Elongation of fatty acids protein 2
KO
K04799
flap endonuclease-1 [EC:3.1.-.-]
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03030
DNA replication
ppsd03410
Base excision repair
ppsd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
87911272 (FEN1)
03410 Base excision repair
87911272 (FEN1)
03450 Non-homologous end-joining
87911272 (FEN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppsd03032
]
87911272 (FEN1)
03400 DNA repair and recombination proteins [BR:
ppsd03400
]
87911272 (FEN1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ppsd04147
]
87911272 (FEN1)
DNA replication proteins [BR:
ppsd03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
87911272 (FEN1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
87911272 (FEN1)
DNA repair and recombination proteins [BR:
ppsd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
87911272 (FEN1)
Exosome [BR:
ppsd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
87911272 (FEN1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XPG_N
XPG_I
5_3_exonuc
Fe_dep_repr_C
CDKN3
Motif
Other DBs
NCBI-GeneID:
87911272
NCBI-ProteinID:
XP_062742705
UniProt:
A0ABR0GDC3
LinkDB
All DBs
Position
5:<3901859..>3903179
Genome browser
AA seq
398 aa
AA seq
DB search
MGIKNLFQIIKDEAPDAVKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNEDGET
TSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEAHEGLEEAKETGTT
EEVEKFSRRTVRVTREHNAECQKLLKLMGIPYIIAPTEAEAQCAVLARAGKVYAAASEDM
DTLCFDSPILLRHLTFSEQRKEPIQEIHVAKVLEGLGMERKQACYFVDLCILLGCDYLDP
IPKVGPSTALKLIREHKTLEGVVKFMKEDPKSKYVIPEDWPFEDARDLFFNPDVRQADDP
LCDFKWEKPDIEGLVQFLVKEKGFSEDRVRGAAARLEKNMKSSQQSRIEGFFKVQPKTEE
QKKAHKRKLEEQNEAKKKKLKDEKKEKAKLKAKPRGTA
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgggaatcaaaaacttattccagatcatcaaagacgaggcgcccgatgcggtcaaggag
ggggagatcaagaaccagtttgggaggaaggttgcgattgacgcctctatgtcaatctac
tcgttcctcatcgccgtccgctccgacggccagcagctcatgaacgaagacggggagacg
acgtctcatctgatgggcatgttctaccgcactcttcgaatggtggacaatgggattaag
ccgctttatgtctttgacggcgcgccgcccaagctcaagtctggcgagctcgccaagcgg
ttccagcgcaagcaggaggcacacgaggggttggaggaggccaaggagacggggacgacg
gaggaggtggagaagtttagtcggaggacggtgagggtgacgagggagcataatgccgag
tgtcagaagctgttgaagctgatggggataccgtatattattgcgccgaccgaggcggag
gcgcagtgcgcggtgctggccagggcggggaaggtgtatgcggcggcgagtgaggatatg
gacacgctgtgttttgacagtccgattttgctgaggcatttgacgttttcggagcagagg
aaggagccgattcaggagattcatgtggcgaaggtgttggaggggttggggatggagagg
aagcaggcatgttactttgtcgacctttgcatcctcctcggctgcgactacctcgatccc
atccccaaggttggaccctcgaccgccctcaagctcattcgcgagcacaagactctggaa
ggagtggtcaagtttatgaaggaggatcccaagagcaaatatgtcattcctgaggactgg
ccctttgaggatgccagagacctctttttcaaccctgacgttcgtcaggcggatgacccg
ctttgcgacttcaagtgggagaagcctgacatcgaggggctggttcagtttctggtcaag
gagaagggtttctctgaggacagagtgaggggcgcggcggcgagactggagaagaacatg
aagagcagccagcagagcagaatcgagggcttcttcaaggtgcagcccaagacggaggag
cagaagaaggcgcacaagcggaagctggaggagcagaacgaggcgaagaagaagaagctg
aaggacgagaagaaggagaaggccaagttgaaggctaagccgagggggactgcttga
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