KEGG   Podospora pseudocomata: 87912840
Entry
87912840          CDS       T09797                                 
Name
(RefSeq) hypothetical protein
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
ppsd  Podospora pseudocomata
Pathway
ppsd03040  Spliceosome
ppsd04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ppsd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    87912840
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    87912840
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ppsd03041]
    87912840
   04121 Ubiquitin system [BR:ppsd04121]
    87912840
   03400 DNA repair and recombination proteins [BR:ppsd03400]
    87912840
Enzymes [BR:ppsd01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     87912840
Spliceosome [BR:ppsd03041]
 Complex B
  Other components
   Prp19 complex
    87912840
 Complex C
   Prp19-CDC5 complex
    87912840
Ubiquitin system [BR:ppsd04121]
 Ubiquitin ligases (E3)
  U-box type E3
   87912840
DNA repair and recombination proteins [BR:ppsd03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    87912840
SSDB
Motif
Pfam: WD40_Prp19 Prp19 Beta-prop_IFT122_1st Beta-prop_EML_2 Beta-prop_THOC3 WD40_CDC20-Fz WD40_WDHD1_1st WD40 Beta-prop_WDR3_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR5 Beta-prop_WDR3_2nd ANAPC4_WD40 WDR55 Beta-prop_WDR19_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st WD40_Gbeta PEP5_VPS11_N EIF3I WD40_RFWD3 Beta-prop_Vps41 Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_IFT140_1st Beta-prop_NOL10_N B-prop_COPA_B_2nd eIF2A WD40_MABP1-WDR62_1st Tricorn_2nd Beta-prop_RIG_2nd Beta-prop_ACSF4 Beta-prop_Aladin V_ATPase_I_N zf-Nse WD40_like PROPPIN DUF8262
Other DBs
NCBI-GeneID: 87912840
NCBI-ProteinID: XP_062739978
UniProt: A0ABR0G5K6
LinkDB
Position
7:complement(3818534..3820437)
AA seq 478 aa
MLCALSGEVPEEPVVSRKTGTVFEKRLILKYIQENGKEPGTEEELDPEDLLDVKTSRVVR
PRPPNFTSLPSLLKAFQDEWDALVLEAYNTREQLSRTREELATALYQHDAAVRVIARLTK
ERDEARDALSKITVAPSAGGASNGDAMAVDNEGLPEGLVEHVNEVQQQLTQRRREKRPAP
ENWATPDEVSAFQQTGHTDLSVSQASSLDVESEYAVIGGLDGKADIYSIQGNTVERSLDI
GEPVTCTVWTGSKVILGTSKGSVKVLDSGSEVASFHVHAGAVTGLTVHPGGRILASVGVD
KSFVFYDLETLQQVSRGYTDAALTSCAFHPDGHFLAAGTQAGDINVFRTKDGVKVVNFHL
GAPVQALVFSENGYWFAATGKGQQTVTIFDLRKEGDAAKAKELQTGDAQSLAWDRTGQYL
ATVGSTGVTVQMYLKKAKAWSEPLRTSVPGTAIRWGADAKSLVTVNKEGVVSVLKESA
NT seq 1437 nt   +upstreamnt  +downstreamnt
atgctttgcgcactgtctggcgaggttcccgaggagcctgttgtttcgagaaagacaggc
actgtctttgagaagcgcctaattctcaagtacattcaagaaaacggaaaagaaccaggc
accgaagaagagctcgaccccgaagacctcctcgatgtcaagaccagccgcgtcgtccga
cctcgtcctccgaatttcacctctctgccgtcgctgttgaaggcctttcaggatgagtgg
gacgcgttggtattggaagcatacaacacaagggagcagctgtctagaacaagagaagag
cttgcgacggccctgtaccaacacgatgccgccgtgcgcgtgattgcgcggctgaccaag
gagcgggatgaggcccgggatgctctttccaagatcaccgttgcgccttcggctggcggt
gcttccaatggcgatgctatggcggtggacaacgagggtctcccagaaggactggtggaa
catgtcaatgaggtgcaacaacagttaacacaacgccggcgcgagaagcgacccgcccca
gagaattgggccaccccagacgaagtctcagccttccagcaaactgggcacaccgatctc
tccgtctcgcaagcctcctccctcgatgtcgaatccgagtatgctgtcattggcgggttg
gatggcaaggccgatatctattccattcagggcaacacagtggagcgctcgctggatatc
ggtgagccggtaacatgtacggtgtggacgggaagcaaggttatcctgggtacctccaag
ggctcggtcaaggtgttggacagcggcagcgaggttgcttcattccacgtacacgccggt
gcagtcactggtctcactgtgcaccccggtggccgtatcctggcctcggttggcgttgac
aagagctttgtcttttacgatcttgagacactgcaacaggtgtctcgaggctacacggat
gctgctctgacatcctgtgccttccaccccgacggccactttcttgctgctggcacacag
gcgggagacattaatgtcttccggaccaaggatggcgtcaaggttgtcaactttcacctt
ggggctcctgtccaggcgctggtgttctccgagaatgggtactggtttgcggcaacgggc
aagggccagcagacggtcaccattttcgacctgcggaaagagggtgatgcggccaaggcc
aaggagctccagacgggcgatgcgcagtctcttgcgtgggaccgcactgggcagtacctc
gcgacagttgggtccactggcgtcacggtgcaaatgtatctgaagaaggccaaggcgtgg
tccgagccactcaggacgagcgtaccaggcacggctatccgctggggagcagatgcgaag
tctctggtgacggtcaacaaggagggtgtggtctcggtgctcaaggagagtgcatag

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