Podospora pseudocomata: QC762_0017000
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Entry
QC762_0017000 CDS
T09797
Symbol
SUB2_1
Name
(RefSeq) Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03013
Nucleocytoplasmic transport
ppsd03015
mRNA surveillance pathway
ppsd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
QC762_0017000 (SUB2_1)
09122 Translation
03013 Nucleocytoplasmic transport
QC762_0017000 (SUB2_1)
03015 mRNA surveillance pathway
QC762_0017000 (SUB2_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsd03019
]
QC762_0017000 (SUB2_1)
03041 Spliceosome [BR:
ppsd03041
]
QC762_0017000 (SUB2_1)
Enzymes [BR:
ppsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QC762_0017000 (SUB2_1)
Messenger RNA biogenesis [BR:
ppsd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
QC762_0017000 (SUB2_1)
Spliceosome [BR:
ppsd03041
]
Complex C
Other components
EJC/TREX
QC762_0017000 (SUB2_1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
QC762_0017000 (SUB2_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
CMS1
Motif
Other DBs
NCBI-GeneID:
87902551
NCBI-ProteinID:
XP_062749216
UniProt:
A0ABR0GX21
LinkDB
All DBs
Position
1
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AA seq
350 aa
AA seq
DB search
MLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRFSKY
MPDIKTGVFYGGTPIQKDAEILKNKDTHPHIIVGTPGRLNALVRDKHLRLGSVRMFVLDE
CDKMLDQIDMRRDVQEIFRATPQQKQVMMFSATLSDEIKPICRKFMQNPTEHYVDEDTKL
TLHGLQQYYLALEEREKNRKLNELLDDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAV
HSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGR
AGRFGTKGLAISFVTTEQDKEVLQAIEKRFEVALPEFPKEGIDASTYMAS
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgcttggtggtgacatcatctgccaggccaagtccggtctcggtaagactgccgtcttc
gtcctcacgaccctccagcaggtcgagcctgttgccggcgagtgctccgtgttggttatg
tgccacacccgtgagctggccttccagattcgcaacgagtacaaccgcttcagcaagtac
atgcccgacatcaagaccggcgtcttctacggtggtactcctatccagaaggatgccgag
atactcaagaacaaggatacccacccccacatcattgtcggcacacctggccgcttgaac
gcccttgtccgcgacaagcacctccgtcttggcagtgtcagaatgttcgtcctcgatgag
tgcgacaagatgcttgatcagattgacatgcgccgtgacgtgcaggagatcttccgtgct
actcctcagcagaagcaggtgatgatgttttcggccactttgtccgacgagatcaagccc
atttgccggaagttcatgcagaaccccaccgagcactacgtcgatgaggataccaagttg
acgctccacggcttgcagcagtactatcttgcccttgaagagagggagaagaaccgtaag
ctgaacgagctcctggacgacctccagttcaaccaggtcatcatcttcgtcaaaagcacc
ctgcgcgctaccgagctggataagctcctccgcgagtgcaacttcccttcgattgccgtc
cactccggtgtcagccaagaggagcgtatcaagagatacaaagagttcaaggagttcaac
aagcgtatctgcgtggccaccgacgttttcggccgtggtatcgatatcgagcggatcaac
ctcgctatcaactacgacatgcccgctgatgccgattcctacctccaccgtgtcggtcgt
gctggacgtttcggtaccaagggtctcgccatctccttcgtgaccaccgagcaggacaag
gaggtcctccaagccattgagaaacgcttcgaggtcgctcttcctgagttccccaaggag
ggtatcgatgcctccacctacatggcctcttag
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