Podospora pseudocomata: QC762_101880
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Entry
QC762_101880 CDS
T09797
Symbol
RAD50
Name
(RefSeq) DNA repair protein rad50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03440
Homologous recombination
ppsd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
QC762_101880 (RAD50)
03450 Non-homologous end-joining
QC762_101880 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppsd03032
]
QC762_101880 (RAD50)
03400 DNA repair and recombination proteins [BR:
ppsd03400
]
QC762_101880 (RAD50)
DNA replication proteins [BR:
ppsd03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
QC762_101880 (RAD50)
DNA repair and recombination proteins [BR:
ppsd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
QC762_101880 (RAD50)
BRCA1-C complex
QC762_101880 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
QC762_101880 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_21
SMC_N
SbcC_Walker_B
AAA_15
AAA_13
BRE1
AAA_29
ABC_tran
AAA_16
Motif
Other DBs
NCBI-GeneID:
87904483
NCBI-ProteinID:
XP_062747420
LinkDB
All DBs
Position
1
Genome browser
AA seq
1320 aa
AA seq
DB search
MSRIEKLSILGVRSFSPHEQQAIAFNTPLTLIVGYNGSGKTTVIECLKYATTGELPPNSK
GGAFIHEPELEGEKDVRAQVKVSFRSTIGEQYVLTRNVQLTVKKTTRSMKTLEGSLLLRG
QSGGKSSDRHVISTRVMELDKLVPEKLGVSPAVLEAVIFCHQDESMWPMSEPSALKKRFD
EIFEAMKYTKVIDNLKVLRKRKGEELRELKIQETQDKVNKERADKVGRLIIQMSQEIEEA
QTKCSDILKQMGAKAKEIKDKHEQANSFLKIVNDLQNKTEKLEYKSEAIRELRSRIEELP
DSDDVLRNTLAEYAQTIERTVADRDRKQAQQQELQADLKQSRDRHTAKVAEQGKHQSDKD
KYERQLATRDRMVHEAAERHEIRGYDGDLDGDLIESFYERIQKALNDKKHELERLQKSNA
EELDKKSSVIAELEGRKQSLNRDRASAKQRIMAIGRESATVQGELGSLDVDEGSEAALRA
EMKEVEARIEAAKADEQSADLDDQIKKVQDEIWQLETQAAKLGRELVECTRLASERAQLD
LRKKQLTDRRRDLDILKNTWSEQLSALLGANWTPDTVEAEFQSALRKQDGVVAEARKQKD
ATQQELKQVEYKLSTTRDRHIKLLTEMKSCQRDVLKALRATRDENDPEHPPIDNYEAQTK
HVETELAQIESDLKLTEEMKTYYTKVKTVAEKHNKCNLCDRDFHNQEDVKRRVFNKIAKA
LGDEVKQELEADRADFAARLRQLKAVRAQYDTYGRLEKEVPTLSAELNVCTIQKEDLVRR
LEDKDLAFGKAEEQRREMDSLSKNVLKISQNHKDIQEAERQVERSQQSSSVTTRSPDEIN
EEQTTCAEQTRVAQTRLNKLTVERQRLKDLASQLEVERLELRHKIATAAQQLERKKSLQD
QIRRFKEEQAQLRESVQTADNDLEALEPEMATARSALDEVRQHGRAKEQKVTEKRDAIGG
TVSELRMINGEIQEYLERGGPSNLASNQRAITTLEATIASIEAEMKDLTVQINKLNKEID
NSDAKKRNISDNLTYRKNLRERVALQQEIEELKSRKAEEDYQRLSLEARILEDQRGLLTA
ERERLMGNVASKDDQLSRLQEEYDLDLKGAKAKYKESHIKVETTKAAIDDLGRGTVALDH
AIMQFHSLKMEEINRIIGELWRETYQGTDIDTIQIRSDVESGAGSGGGGKRNYNYRVSMV
KGDTEMDMRGRCSAGQKVLASIIIRLALAESFGVNCGLIALDEPTTNLDSDNIRSLASSL
HRIIKARQSQGNLQLIVITHDEEFLKHMRCQDFCDTFYRVERNARQNSVIRVENITRISE
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggatcgagaagctgtccatcttgggcgtgcgctcattcagtccccatgagcag
caggccatcgcttttaacacaccgctcaccctgattgtcgggtacaatggttcgggcaag
acgactgtgatcgaatgcctcaaatatgccaccacgggtgagctcccgcccaacagtaaa
ggcggtgcctttatccatgagcctgagctggaaggcgaaaaggatgtgcgcgcccaggtc
aaggtgtcgttcagatcaaccataggagagcagtatgtcttgactcgcaatgtgcaattg
acagtcaaaaagaccacaagatcgatgaagacactggaaggcagtcttcttctgaggggc
cagtctggaggaaaatcttcggaccgtcatgtcatttccaccagagtaatggagctggac
aagttggtcccagagaagcttggtgtttcgccagccgtgcttgaggccgtcattttctgc
caccaggatgagtccatgtggcccatgagcgaaccctcggctctgaagaagcggttcgat
gaaatcttcgaggccatgaaatacaccaaggtaatcgacaatctcaaagtgctccgcaag
agaaagggagaagagctgcgagaattgaaaattcaagagacgcaagacaaggtcaacaag
gagagagccgacaaggttggcaggctcataatacaaatgagccaggagattgaagaagcg
cagacaaaatgcagcgatatcctcaagcaaatgggagccaaggccaaggaaatcaaggac
aagcacgaacaggccaacagtttcttgaagattgtgaacgacctgcaaaacaagaccgag
aagctcgaatacaagagcgaagctatcagggaactacggagccgtatcgaagaactgccg
gatagtgatgatgtactgcggaacactctggctgagtatgcgcagacaatagagaggact
gtggccgacagagataggaagcaggcacagcaacaggagctccaagcggatctaaagcag
tctcgggacaggcatacggccaaagttgccgaacagggcaaacatcaatccgataaggac
aagtatgagcgccaactggccacaagagatcgaatggttcacgaggcggccgagcgccac
gagattcgcggctacgatggagacctggacggtgatctgatcgagtctttttacgaacgt
atccagaaagccctcaacgacaaaaagcacgagctggagcggctccaaaagagcaatgct
gaagaactggacaagaagagctctgttattgctgagcttgaaggccggaaacaatcactg
aaccgggatcgggcctcagcaaaacaacgcatcatggccattgggagggagtcagccacc
gttcaaggcgaacttggttctctcgacgtggacgagggctctgaggctgctcttcgtgca
gaaatgaaagaagtcgaggcaaggattgaggcagcaaaggccgacgaacaatctgcggac
ctcgacgaccagatcaaaaaggtccaggatgagatctggcaactggaaactcaagctgcc
aagctcgggcgggaactggttgaatgcaccagactggcgtctgagcgtgcacagcttgat
ctgcgcaagaagcagctgactgaccgacggcgcgatcttgatattctcaagaatacctgg
tctgagcagctgtcggcgcttctgggcgcaaactggacaccggacactgtcgaagctgaa
tttcagagcgccttgagaaagcaggacggtgttgttgccgaagccagaaaacagaaagac
gccacgcagcaagaactcaagcaggtcgagtacaagctgtccaccactcgggaccggcac
atcaagcttttaacagagatgaagagctgccaacgtgacgttttgaaagcactacgtgcc
accagggacgagaacgaccctgagcacccccctatcgacaactacgaggcgcagacaaag
cacgtagagacggagcttgcccagatcgagtctgatctcaagttgactgaagagatgaag
acctactacaccaaggtcaagacagttgccgaaaagcacaacaagtgcaacctttgcgac
cgagatttccacaaccaggaagacgtaaagagaagggtcttcaacaagattgccaaggca
cttggcgatgaagtgaagcaggagttggaggcggacagggcagatttcgctgctcgtttg
aggcagttgaaagctgtgcgtgcccagtatgatacctatggacgtctcgaaaaggaggtg
cctaccctgtccgcggagctcaatgtctgcacaatccaaaaggaagacctggtgcggcgg
ctggaggacaaggacctcgcctttggcaaggcggaagagcaacgacgggagatggactct
ctcagcaagaatgttttgaagatttctcaaaatcacaaagacatccaggaagccgagagg
caggtcgagcggtcgcagcaatcttcaagcgtgaccactcgcagtcccgacgaaatcaac
gaggagcagaccacctgtgcggagcaaactcgtgtcgcccagaccagactcaacaagctc
actgtcgagagacagcgactcaaggatttggcttcgcagctcgaggtggagaggcttgag
ttgagacacaagatagccactgcggcccagcaacttgagcggaagaagagtcttcaagac
caaattcgtcgcttcaaggaggaacaagcacagctccgcgagtcggttcagactgctgac
aatgatctggaagccctcgagcccgagatggccaccgcacgctctgcccttgacgaagtg
cggcaacacggtcgggccaaggagcaaaaggtcacagagaagcgcgatgctatcgggggc
actgtcagtgagctcaggatgattaacggtgaaattcaagagtatctcgagcgtggtggc
ccctcgaatctagcttccaaccagcgcgccattaccacgctggaggcaactattgccagc
attgaggctgagatgaaggatttgaccgtgcagatcaacaagctgaataaggagattgac
aacagcgacgccaagaagagaaacatctccgacaatctcacctaccgcaagaacctccgc
gagcgtgtcgctcttcaacaggagattgaggagctcaaatcccgcaaagccgaggaagac
taccagcgtctcagcctcgaggcgcgcatcctcgaagatcaacgaggcctgttgacggcg
gagcgggaacggttgatgggcaacgtggcgtcgaaggacgaccagctgagccggctgcaa
gaagaatacgatctcgacctcaagggcgccaaggccaagtacaaggaatcacacatcaag
gttgagacgaccaaggcggctattgacgaccttggccggggcaccgtggctctcgaccat
gccattatgcaattccactctctcaaaatggaggagatcaaccgcatcatcggcgagctc
tggagggagacgtaccaaggcacagacattgacacgatccagatccggtccgacgtagag
tcgggtgccggttcgggaggcggcggcaagcgcaactacaactatcgggtgtcgatggtc
aagggcgacacggagatggacatgcgcgggcggtgctcggcaggccaaaaggtgctggcg
agcatcatcatccggctggcgctggccgagtcgtttggcgtcaactgcggcctgatcgcg
ctggacgagccgacgaccaacctcgacagcgacaacatccgcagcctggcgagcagcctg
cacaggatcatcaaggcgaggcagtcgcaggggaacctgcagctgattgtgatcacccac
gacgaggagtttttgaagcacatgcggtgccaggacttttgcgacacgttttaccgggtg
gagcgcaacgcgaggcagaacagtgttattcgggtggaaaacatcacgaggatctccgag
taa
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integrated database retrieval system
