Podospora pseudocomata: QC762_105330
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Entry
QC762_105330 CDS
T09797
Symbol
RPD3
Name
(RefSeq) histone deacetylase
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03082
ATP-dependent chromatin remodeling
ppsd03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
QC762_105330 (RPD3)
03083 Polycomb repressive complex
QC762_105330 (RPD3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ppsd03036
]
QC762_105330 (RPD3)
Enzymes [BR:
ppsd01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
QC762_105330 (RPD3)
Chromosome and associated proteins [BR:
ppsd03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
QC762_105330 (RPD3)
HDAC complexes
Sin3A-HDAC complex
QC762_105330 (RPD3)
BRAF-HDAC complex
QC762_105330 (RPD3)
REST complex
QC762_105330 (RPD3)
SHIP complex
QC762_105330 (RPD3)
MiDAC complex
QC762_105330 (RPD3)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
QC762_105330 (RPD3)
Heterochromatin formation proteins
Other heterochromatin formation proteins
QC762_105330 (RPD3)
Chromatin remodeling factors
NuRD complex
QC762_105330 (RPD3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
87904832
NCBI-ProteinID:
XP_062747840
LinkDB
All DBs
Position
1
Genome browser
AA seq
783 aa
AA seq
DB search
MDPLISALLNLREPRRRRGIGELPSSLVAAAHGLSAEHQLFPHTQNGGADFDSPTFLLSH
GSERSYIKYEDDTRINLLNRPSHPGRAKLDWDSSRDPDPGFEPIPFCPPLLSPIRFLPSS
REHEHHELDELCETKEPPPQHTFSSICFATMSNSNSTDPAGVERTRPLFEVVKNDKKRVA
YFYDSDIGNYAYVTGHPMKPHRIRLAHSLVMNYNVYKFLEIYRAKPAVTSEMTQFHTDEY
IEFLQKVTPDNMDSFMREQGKYNVGDDCPVFDGLFEFCGISAGGSMEGAARLNREKCDIA
INWAGGLHHAKKSEASGFCYVNDIVLAILELLRFKKRVLYIDIDVHHGDGVEEAFYTTDR
VMTVSFHKYGEYFPGTGELRDIGIGTGKHYAVNFPLRDGIDDVAYETIFEPVITNVMQYY
QPEAVVLQCGGDSLSGDRLGCFNLSMRGHANCVNFVRGFNLPTLVLGGGGYTMRNVARTW
AYETGRLVGVEMDRVLPFNEYYEYYGPDYELDVRNSNMENANSYEYLEKIKIQVIENLKR
TAPVPSVQMQDVPRQSMGVSDDQDDEMDDLDEDENKDVRMTQRQWEKRVERQDEYEDSDD
EDMAAANGVFKLNGRTRQETNFRDTKEDDTMEVDSGIATPAEQPVEITENDDTMIDEALA
EIAAEAEAEAQVKEPAATETAPEAPTAAVDGDGDVDMGEVTESKAAETVIKTEDVEEPAP
AKQDDSQATTVVSPKKTTEVAAQPSRTSKSPEPAVATDKQTESVSEASEVVPPTTTQDNT
TNS
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggatccactaatctcagccttgttgaatctgcgggagccacggcggcggcgtggaatt
ggtgaattgccttcctcgctggtcgcggcagctcatggcctttccgcagaacatcaactt
ttcccccacacacaaaacggcggcgctgactttgattctcctacctttttgttgagccac
ggcagcgaaagaagctacatcaaatacgaagacgatactcgcatcaatcttctcaaccgg
ccctctcaccctggccgcgcgaaacttgactgggactcgagccgcgacccagatcccggc
ttcgaacccattcctttctgcccaccgctgctgagcccgatccggtttttgccttcttca
cgagaacacgagcatcacgaacttgacgagctttgcgaaacgaaggaaccccccccgcaa
cacacattctcatccatttgctttgcaacaatgtctaattccaactcgaccgacccagcg
ggtgtcgagaggaccaggcccctcttcgaggtggtcaagaatgacaagaaaagggttgct
tacttctacgactccgacattggcaactatgcctacgttacaggccaccccatgaaaccg
caccggatacgtttggcgcactctttggtgatgaactacaacgtctacaagtttctcgag
atttaccgtgcgaaaccagctgtcacgagcgagatgacacaattccacacagacgagtat
atcgagtttttgcaaaaagttactcccgacaacatggactcctttatgagagaacaaggc
aaatacaatgtcggggacgattgcccagtattcgatggactctttgagttttgcggcatc
agcgctggcggttccatggaaggcgcggcaaggttgaacagagaaaagtgcgacatcgca
atcaactgggcgggtggcctgcatcacgcgaaaaaaagcgaggctagcggcttctgctat
gtcaatgatatcgtgcttgcgatcctcgagctgctccggttcaaaaagcgtgttctgtac
atcgacatcgacgttcaccatggtgacggtgtcgaggaggccttctacaccactgaccgt
gtcatgacggtttcattccacaagtacggagaatactttcctggtactggcgagcttagg
gacattggcattggcaccggcaagcattacgccgttaatttccctcttcgcgacggcatc
gacgacgtcgcgtatgaaaccatctttgagcccgtgatcacgaacgtgatgcaatattac
caacctgaggctgtggtccttcagtgcggcggagactctctctctggtgatcgtctcggc
tgcttcaacctcagtatgcgcggacatgcgaactgcgtcaactttgttcgcggcttcaac
ttgccaactctggttctcggaggcggtgggtacaccatgcgcaacgtcgcccgcacatgg
gcttacgagacgggccgcttggtcggcgttgagatggatcgagtactgccatttaatgaa
tattacgagtactacggtccggattacgagctggatgtgcgaaattccaatatggaaaac
gcaaacagctacgaatacctggagaagatcaagattcaggtcatcgagaatctaaaacgc
acagcccctgtcccttccgtccagatgcaggatgtaccacgccagtcaatgggtgtctct
gatgaccaagacgacgagatggatgacctggacgaagatgagaacaaggacgtccgcatg
acccagcggcagtgggagaagcgtgttgagcgccaagatgagtacgaagactcggacgat
gaggatatggcagctgccaacggagtcttcaagctcaatgggaggacccgacaagagacc
aacttccgcgataccaaggaagacgacaccatggaggtcgacagtggaatcgccacaccc
gctgagcagccagttgagattaccgaaaacgatgatactatgatcgacgaggccctcgcc
gaaatcgcagcggaagcggaagcggaagcacaagtcaaggagcctgctgctactgagaca
gcacctgaggctccaacagcagcggttgacggcgacggtgacgtggatatgggagaggtt
acagaaagcaaggcggccgaaacagtgatcaagaccgaagatgtcgaagagcctgcgcct
gccaagcaggacgacagccaggctacgactgtggtatcgccaaagaagaccacggaggtg
gcagctcagccatcacgcacatccaagtcgccagagccagctgttgccaccgacaaacaa
accgagagcgtgtcagaggccagcgaggtggtgccaccgacaaccactcaggacaatacg
accaatagttag
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