Podospora pseudocomata: QC762_113680
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Entry
QC762_113680 CDS
T09797
Symbol
PRP16
Name
(RefSeq) DEAH-box RNA helicase prp16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
QC762_113680 (PRP16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppsd03041
]
QC762_113680 (PRP16)
Enzymes [BR:
ppsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QC762_113680 (PRP16)
Spliceosome [BR:
ppsd03041
]
Complex C
Other components
Step II factors
QC762_113680 (PRP16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SRP54
nSTAND3
ResIII
SLFN-g3_helicase
AAA_30
ATPase
T2SSE
AAA_16
Flavi_DEAD
AAA_7
PhoH
NACHT
ABC_tran
Motif
Other DBs
NCBI-GeneID:
87905697
NCBI-ProteinID:
XP_062748759
LinkDB
All DBs
Position
1
Genome browser
AA seq
998 aa
AA seq
DB search
MGRDYEDDRSNKRRKLDFNPLRNDDRFSDIPSRPQNRFNSRSSTPRAGSRLAGASTPKQR
EFDGPAEGVDDQDAINALDRDWYGGDDDLGGHTFGDDTHNPFGDEAGWAAQEREAALIEK
KGANFSRSGMNARRLQKQKDVDAWETNRMLTSGVAQRRDMGRDFEDDQEGTRVHLLVHDL
RPPFLDGRTVFTKQLEPIPAVRDAQSDMAVFSRKGSRVVKERRTQRERAKQAQEATKVAG
TALGNLMGVKEEDTDSALPIASEESGKAQNSNKFSEHMKKSEGASNFSQSKSLKEQREYL
PAFAVREDLLRVIRDNQVVIVVGETGSGKTTQLAQFLYEDGYGKFGMIGCTQPRRVAAMS
VAKRVAEEMEVKLGSTVGYAIRFEDCTSKETVIKYMTDGVLLRESLNEPDLDRYSCVIMD
EAHERALNTDVLMGLFKKILQRRRDLKLIVTSATMNSKRFSDFYGGAPEFTIPGRTFPVD
VMFHRSPVEDYVDAAVQQVLAIHVGKPAGDILVFMTGQEDIEVTCELVRERLDALNDPPK
LSILPIYSQMPADLQAKIFDRAAPGVRKCIVATNIAETSLTVDGIMYVVDAGYSKLKVYN
PRMGMDTLQITPISQANASQRSGRAGRTGPGQAYRLFTEKAFKDEMYISTIPEIQRTNLS
NTVLLLKSLGVKDLLDFDFMDPPPQDTITTSLFDLWALGALDNLGELTDLGRKMNAFPMD
PSLAKLLIMSEQYGCSEEMVTIVSMLSVPNVFFRPKERQEESDTAREKFFVPESDHLTYL
HVYTQWKANGYSDRWCVQHFLHSKSLRRAKEVRDQLLDIMKMQQMEMVSCGTDWDVIRKC
ICSGYYHQAAKVKGIGEYINLRTSVTVQLHPTSALYGLGFLPDYVIYHELILTSKEYMST
VTSVDPHWLAELGGVFYSVKEKGYSAREKRITETEFNKKMEIEAQMAADKKRHEEEVQAE
EELKLVKKAGPAGKSKDKKTVTSGAVVKPVRKRAGRGF
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgggccgcgactacgaagatgaccgctcgaacaagcggaggaagctggacttcaaccca
ctgcgtaacgacgatcgattcagcgacatcccatcccgcccccaaaaccgcttcaactcg
agaagctctacaccgcgcgccggctcaagattggctggcgcatccacaccaaagcaacga
gagtttgacggcccagcagagggcgtcgacgaccaagatgccatcaacgctctcgaccgc
gactggtatggtggtgacgatgacttgggtggacacacgtttggcgacgacacccataat
ccattcggcgatgaggcaggctgggcagcgcaggaaagggaggccgccttgatagagaaa
aagggcgccaacttttcgcgcagcggcatgaacgcgcgacggttgcagaaacaaaaggat
gtggatgcgtgggagaccaacagaatgctcacatccggtgtggcgcaacgaagagatatg
ggacgcgattttgaggacgaccaagaagggacccgcgttcatcttctcgtgcatgaccta
cgaccgccgttcttggacggacgaactgtctttacgaagcaattggagcccattcctgcc
gttcgagatgcccaaagtgatatggctgtcttcagcaggaaagggagtcgcgttgtgaag
gaaaggcgcacgcagagagaacgcgcaaaacaggctcaggaggcaacaaaggtggcagga
actgcgctgggtaacttgatgggggtgaaagaagaggacaccgacagcgcccttcccatc
gcgagtgaggaatctggaaaggcgcaaaactcgaacaaattcagcgaacatatgaagaag
tcggagggcgcaagcaacttcagtcaaagcaaatccttgaaagaacaacgggagtatctt
ccagcgtttgctgttcgcgaagatttgctacgggtaattcgagacaaccaagtggtcatt
gtggtcggagaaacaggctctggcaaaacgacacagctggcccagtttctgtatgaagat
ggctacggcaagtttggtatgattgggtgcacacaaccccgaagagtagcagcaatgagt
gttgccaaacgtgtggctgaggaaatggaagtaaaactcgggagtacagtgggctatgcg
attcgtttcgaggactgcaccagcaaagagacggttatcaagtacatgacagatggtgtg
ttgcttcgagaatctctgaatgagccggaccttgatcgatactcgtgcgtcatcatggat
gaagcccacgaaagagcgctcaataccgacgttctcatgggcttgttcaaaaagattctt
cagagacgccgcgatctgaaactgatcgtgacttcggccacgatgaactccaaacgcttc
tccgacttttacggcggagctcccgagttcacgatcccgggccgaacattccccgttgat
gtcatgtttcaccggtcacctgttgaggactacgtggatgcggccgtgcagcaggtcctg
gcgattcatgtgggcaaaccagcaggcgatattctggtattcatgacgggccaggaagat
atcgaggtaacgtgtgagcttgtccgtgaacgcctggatgcgctcaacgatcctccaaag
ctcagcatcctccccatttacagtcaaatgccggcagatttgcaggccaagattttcgac
cgagctgccccgggtgttcggaaatgtatcgtggctaccaacattgccgagaccagtttg
acggtcgatggtatcatgtatgtggttgacgcagggtactcgaagctcaaagtgtacaac
ccacgaatgggtatggacacgctacaaatcacccccatctcgcaagcaaacgcatcgcag
cgttccggtcgtgccgggcgaaccggccccggacaggcctaccgtcttttcaccgaaaag
gccttcaaagacgagatgtacatctccacaatccccgagattcaaagaaccaacctgagc
aacacagtcttgctcctcaagtccctcggcgtcaaagacctgctcgactttgactttatg
gaccccccaccccaagacaccatcacgacctccctgttcgacctgtgggcgctgggagcc
ctggacaacctcggcgagctgaccgacctgggacggaagatgaacgccttccccatggac
ccctccctcgccaaacttctgatcatgtcggagcaatatggctgcagcgaagagatggtc
accatcgtctcgatgctctccgtccccaacgtcttcttccgacctaaagaacgccaggag
gaatccgacaccgcacgggagaagttcttcgtgccagaatcagaccacctgacctatctc
cacgtctacacgcagtggaaagcaaacgggtacagcgaccggtggtgcgtccagcacttt
ttgcactccaagtccctccgccgcgcgaaagaggtccgggaccagctgctggatatcatg
aagatgcagcagatggaaatggtgagctgcgggacggactgggacgtgatccggaagtgc
atctgctcggggtattaccatcaggcggccaaagtcaagggcataggcgagtacattaat
ttgcgaacgtcagtgacggtccagctccacccgacgagcgcgctttatgggctggggttc
ttgccggattatgtcatttatcatgagctgatcctgacgtcgaaggagtacatgtctacg
gtcacgtcggtggatcctcactggctggccgagctgggcggggtgttttattcggtcaag
gagaaggggtattcggctagggagaagaggatcacggagaccgagtttaacaagaagatg
gagattgaggcgcagatggcggcggataagaagaggcatgaggaggaggtgcaggccgag
gaggagctgaagctggtgaagaaggctggtccggcggggaagagtaaagataaaaagaca
gtcacgtcgggggcggtagtgaagcccgtgaggaagagggctgggagggggttttga
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