KEGG   Podospora pseudocomata: QC762_113840
Entry
QC762_113840      CDS       T09797                                 
Name
(RefSeq) uncharacterized protein
  KO
K12880  THO complex subunit 3
Organism
ppsd  Podospora pseudocomata
Pathway
ppsd03013  Nucleocytoplasmic transport
ppsd03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ppsd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    QC762_113840
  09122 Translation
   03013 Nucleocytoplasmic transport
    QC762_113840
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppsd03019]
    QC762_113840
   03041 Spliceosome [BR:ppsd03041]
    QC762_113840
Messenger RNA biogenesis [BR:ppsd03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     QC762_113840
Spliceosome [BR:ppsd03041]
 Complex C
  Other components
   EJC/TREX
    QC762_113840
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    QC762_113840
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd WDR55 Beta-prop_Aladin ANAPC4_WD40 WD40_Gbeta Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_SCAP KNTC1_N Beta-prop_EML WDR90_beta-prop_4th Beta-prop_WDR36-Utp21_1st Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 87905715
NCBI-ProteinID: XP_062748738
LinkDB
Position
1
AA seq 339 aa
MPPPVRNRQSLSKDKFVGYFAPLKSQTYHESTQSRGGGVGSIRSVAWNPVGSLVATGSAD
RTLRVWNPEKPNARFSTDLKGHAAGIEKVAFNPVKDAELCSLSKDGVAKFWDVRTKACVN
EVKDLGDAHALAWAPDGSSLLVGNRSGGLFRISPTESAILSSHPQPVEAYQMSFCWSGKK
VFLPTRDGSIRILSYPELEPILRVNHAVKPGESDEFILKGHTAPCLTTELSPTGKYLATG
GGDAIMSLFETQDWICKRTNTRIVGPVKSISFTFDGRYVVGACEDGPGLDVTHTETGEHI
HTFKTAGPCHALAWAPTRYCLAYSDLGILRIIGLDADRK
NT seq 1020 nt   +upstreamnt  +downstreamnt
atgccacctccagttcgcaatagacagagcctatccaaggacaagtttgtgggatacttt
gcaccactgaaaagtcagacataccacgaatccacccaatctagaggaggcggagttgga
agtattcgctcggtagcttggaatcccgttggaagccttgtcgcaactggttcggctgac
agaacccttcgtgtttggaatcctgaaaagcccaatgcgcggttctcgaccgatttaaag
ggtcatgctgcaggcattgagaaagtggccttcaatcccgtcaaggatgcagaactttgc
agtctcagcaaggacggtgttgccaagttctgggatgtaagaacgaaagcctgtgtgaac
gaggtcaaggaccttggagatgcacacgccctcgcctgggcccctgatgggtcctcactt
cttgtaggaaacaggagtggcgggcttttccgaatctccccaaccgagtccgccattctt
tcatctcatccacagcccgttgaggcgtaccagatgtccttttgttggtcgggcaagaaa
gtatttctcccgacaagggacggaagtatccgcatcttgtcttatcctgagctggagccg
attctgcgcgtcaaccatgccgtcaagcctggcgagtcagatgagtttattctcaagggc
cacacagccccatgcctgacgaccgaactgtcacccaccggaaagtaccttgcaacagga
gggggggacgcaattatgtctctatttgagacccaagactggatctgcaagcgtacgaat
acacgcatcgtcgggccagtgaagagcatcagcttcacgttcgatggtcgatatgtcgtc
ggtgcctgtgaagacggccctggtttggatgtcacccatacagagacaggggagcatatt
cacacgttcaaaacagctggaccttgtcatgccttagcgtgggcaccaactaggtattgt
ctggcctatagtgatctggggattctacgcatcattggactcgatgcggatagaaaataa

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