Podospora pseudocomata: QC762_117770
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Entry
QC762_117770 CDS
T09797
Symbol
prp10
Name
(RefSeq) U2 snRNP component prp10
KO
K12828
splicing factor 3B subunit 1
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
QC762_117770 (prp10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppsd03041
]
QC762_117770 (prp10)
03036 Chromosome and associated proteins [BR:
ppsd03036
]
QC762_117770 (prp10)
Spliceosome [BR:
ppsd03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
QC762_117770 (prp10)
Complex B
QC762_117770 (prp10)
Complex C
U2 SnRNP specific factors
QC762_117770 (prp10)
Chromosome and associated proteins [BR:
ppsd03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
QC762_117770 (prp10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
HEAT_EZ
TOR1L1_N
HEAT_EF3_N
HEAT_2
Htt_N-HEAT_1
UTP20
mTOR_dom
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
Opi1
Motif
Other DBs
NCBI-GeneID:
87906121
NCBI-ProteinID:
XP_062749272
LinkDB
All DBs
Position
1
Genome browser
AA seq
1309 aa
AA seq
DB search
RSAAKILARLALGLRLRLPPKFQQGKVLAPSTIQSHPHVHVHVHVLTHVQRPSNNDHHRD
TPSHRPKNERAIHYRSRRHLLPHFNNNLPEWDEHSAVWAAVPCRTRNLIRFASSRPSETR
LPLRKKASLNEAWDTDLYDRSANGADKFAGYHTSLPAQDGDDDEDMADADSSRRLVGQYT
ATRAQIDEFARGNGVEEDDILAGRGEKSNRITDRETDYQKRRFDRVLTPTRADPFAANRQ
AAAAEDGMSYREIMESREIEREEERVRRAIEQKMKDGPTEEHKPTLQIEEAGNKENGDAG
STEAAAAGRKRKKRWDVATTDAEAAPAAAEPKKRSRWDQAPSVPVLGADGTVVEAKKKSR
WDQAPSATPVGNIGLATPMHPTQTAVLPPTAFGPDAGRYMPLSDEELDAMLPGPDEGYKI
LEPPPGYAPTRAPTHKLAVPPTPQTGFMMQDPESTRLSGQAVPREIPGVGDLQFFKPEDM
AYFGKLTDGSNEDDLTVEELKERKIMRLLLKVKNGTPPMRKTALRQLTDNARNFGAGPLF
NQILPLLMEKTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDQDYYARVE
GREIISNLSKAAGLATMISVMRPDIDHVDEYVRNTTARAFAVVASALGIPALLPFLGAVC
RSKKSWQARHTGVKIVQQIPILMGCAVLPHLKQLVDCIGPNLNDEQTKVRTVTSLAIAAL
AEASNPYGIESFDDILNPLWTGARKQRGKGLAGFLKAVGYIIPLMDEDYANYYTSQIMEI
LLREFASPDEEMKKVVLKVISQCAATDGVTAGYLKEHVLDDFFKSFWVRRMALDKRNYRQ
VVETTVDIGQKVGVSEILERIVVNLKDESEAYRKMTVETVEKIVASLGAADIGERLEERL
VDGILHAFQEQSVEDIIMLNGFGSVVNALGTRCKPYLPQIVSTILWRLNNKSATVRQQAA
DLVSRIAMVMKQCGEDALMGKLGVVLYEYLGEEYPEVLGSILGALRSIVTVVGISQMQPP
IKDLLPRLTPILRNRHEKVQENTIDLVGRIADRGPESVNAREWMRICFELLDMLKAHKKG
IRRAANNTFGFIAKAIGPQDVLATLLNNLRVQERQSRVNTAVAIGIVAETCAPFTVLPAL
MNEYRVPELNVQNGVLKSLSFLFEYIGEMAKDYVYAVAPLLEDALIDRDQVHRQTAASVV
KHIALGVVGLGCEDAMVHLLNLLYPNLFETSPHVIDRIVEAIEAVRMAVGPGLVLNYVWA
GLFHPARKVRTPYWRLYNDAYVQAADAMVPYYPNLAEEGVDRGELAIVL
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
cgatctgctgccaagatcttagcgcggctcgctcttggcctgcggctgcggttgccgcca
aaatttcaacaaggcaaagtgcttgctccatccacgatccagtctcacccgcacgtccac
gtccacgtccacgtcctgacccacgttcaacgtccatccaacaacgaccaccatcgcgat
actccctcccatcgccccaagaacgaacgagccatccactaccgatcgcgtcgtcactta
cttcctcacttcaacaacaacctacccgaatgggatgagcacagtgccgtgtgggcagca
gtaccatgtcggacgcggaatttgatcagattcgcaagctccaggccgagcgaaacgcgg
ctgccgctgcgaaaaaaggccagccttaatgaggcctgggataccgacctctacgatcga
agtgccaacggcgccgacaagtttgcaggctatcacacctccctccccgctcaagatggc
gacgacgatgaggacatggccgacgccgatagctcgcgccgcctcgtcggacagtacact
gctacccgtgcccagatagatgagtttgcgcgtggaaatggagtggaagaagacgacatt
cttgccggtcgtggcgagaagagcaaccgcatcacagatcgcgaaaccgattaccagaag
cgtcgatttgatcgcgttctgacccctacccgcgccgaccccttcgccgccaatcgccag
gctgccgctgctgaggatggaatgagctatcgcgagattatggagagtcgcgagattgag
cgtgaggaggagcgcgtgcgccgagctatcgaacagaagatgaaggacggccccactgaa
gaacataagcctacactccagattgaggaggccggaaacaaggagaacggtgatgccggt
tcgaccgaggcagcagccgctggccgcaagcgcaaaaagagatgggatgttgctactaca
gacgccgaggctgccccagcagccgcagagcccaagaagcgctcgcgctgggatcaggca
ccttctgtgcccgttcttggcgctgatggaactgtagtagaagcaaagaagaagtcaaga
tgggatcaagcgccgtctgccacccccgttggaaacattggtctcgccactccgatgcac
cctacacaaactgctgttctgccccccactgcgttcggccccgatgccggccggtacatg
cccctcagcgatgaggagctcgacgctatgcttcctggtcctgacgagggatacaagatt
ctcgagcctcccccgggatatgcccctacccgggcgcccacgcacaagctggcagtgcca
ccaacaccacagacaggcttcatgatgcaggatcctgagagcacacgtctctctgggcaa
gcagttccaagggaaatccccggtgttggtgatcttcagtttttcaagcctgaggacatg
gcgtactttggcaagctcacagacgggtccaatgaagacgatctgactgtcgaagagctg
aaggagaggaagatcatgcgcctgttgttgaaggtcaagaacggtactcccccgatgagg
aagactgcactcaggcagctcacagataatgctcgaaacttcggtgccggacccctcttc
aaccagattctcccgctactcatggagaaaacccttgaggaccaggaacgccatcttctt
gtcaaggttattgaccgtatcctttacaagctggatgatctggttcggccctatgtccac
aagatcttggtcgtcattgagccattgctcattgaccaggactattatgcacgagtcgaa
ggtcgcgagattatttctaacctcagcaaagccgctggcctcgcgaccatgatcagtgtc
atgcggcccgatatcgatcacgtagatgaatacgtacgaaacacaactgccagagcgttt
gctgtggtggcctcggccttgggtattccggccctgctgccattcttgggagccgtgtgc
cgcagcaagaagtcgtggcaggcgcgccataccggtgtgaagattgtccagcagattccc
atcttgatgggctgtgcagtgttgccacacctgaagcagctcgtagactgcattgggccc
aacctcaacgatgagcagaccaaggtacggacagtcaccagtttggccattgctgctctt
gccgaagcctccaacccatatggtattgagagcttcgatgatatcctcaatcccctgtgg
acgggagctcgcaagcaacgaggcaagggcctggcggggttcctcaaggccgtcggctac
atcatccccctcatggacgaggactacgcaaactactacacaagtcagattatggagatt
ctcttgcgagagtttgcctcgccagatgaggagatgaagaaggtcgtgctcaaggtcatc
tctcagtgcgccgcgacggatggtgtcacagctggttatctcaaggaacatgtattggac
gacttctttaagagcttctgggtacggcgcatggctttggataagcgcaactaccgtcaa
gtggttgagaccacggtcgatatcggccaaaaggtcggtgtcagtgagattctcgagaga
atcgtggtcaacctcaaggacgaaagcgaagcctaccggaaaatgactgttgagacagtg
gagaagatagtagcctctctgggtgcggcagacattggcgagcggttggaagagagactt
gtcgatggtatcctgcacgccttccaagagcaaagcgttgaagatattatcatgctcaac
ggttttggctccgtggtcaatgctctgggcactcgctgcaagccatacctcccccagatc
gtcagcacaattctctggcgtctcaacaacaagtctgccacagttcgccagcaagctgct
gatcttgtttccagaattgccatggtgatgaagcaatgcggcgaagacgctttgatgggc
aagctcggtgttgttctttacgaatacctcggtgaagaatatcctgaagttctcggctcc
atccttggtgctctgaggtccattgtgactgtggtgggcatcagccaaatgcagccaccc
atcaaggacctcttgccacgcctcacacccatcctgcgcaaccgacatgagaaagtccag
gaaaacaccattgacctggtcggccgtatcgccgaccgcggaccggaaagtgtcaatgct
cgcgagtggatgagaatctgttttgagctgttggatatgctcaaagcccacaaaaagggc
atccgtcgcgcggccaacaacacgttcggcttcatcgccaaagccatcggcccccaggac
gtgttggccacccttcttaacaacctcagagtgcaggagcgtcagtcacgtgtcaatacc
gccgttgccattggtatcgttgccgagacttgcgctcctttcactgtcctccctgccttg
atgaacgagtaccgggtgccggaactcaacgtccagaacggtgttctcaagtcgctctct
ttcctctttgagtatatcggcgaaatggccaaggactacgtctacgctgttgcacccctc
ttggaggatgccctcatcgaccgtgaccaagtccatcggcaaactgccgcttcagtcgtc
aagcatattgcgctgggcgtggtagggttggggtgtgaagatgccatggttcacttgctg
aacttgctgtatcctaatctgtttgagacgagcccgcacgtcattgacaggattgtcgaa
gcgattgaagcggtgaggatggcggtggggccggggttggtgctgaattatgtctgggct
gggcttttccatccagcgaggaaggtgaggacgccgtattggaggttgtataatgatgcg
tatgtgcaggctgcggatgcgatggtgccgtattatcctaatttggcggaggagggggtt
gataggggggagttggcgattgttttgtaa
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integrated database retrieval system
