Podospora pseudocomata: QC762_119420 Help Entry QC762_119420      CDS       T09797                                  Symbol SEN1 Name (RefSeq) DEAD-box type RNA helicase   KO K10706   ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] Organism ppsd  Podospora pseudocomata Brite KEGG Orthology (KO) [BR:ppsd00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:ppsd03021]     QC762_119420 (SEN1) Enzymes [BR:ppsd01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      QC762_119420 (SEN1)     5.6.2.5  RNA 5'-3' helicase      QC762_119420 (SEN1) Transcription machinery [BR:ppsd03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      QC762_119420 (SEN1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  SEN1_N AAA_11 AAA_12 SEN1_barrel AAA_19 AAA_30 UvrD-helicase Viral_helicase1 DEAD TFCD_C AAA_22 Motif Other DBs NCBI-GeneID:  87906287 NCBI-ProteinID:  XP_062749464 LinkDB All DBs Position 1 Genome browser AA seq 2052 aa AA seqDB search MEGNLEQTIIEWHNDFEDFPPDAHLCCPKLNDDDLTDYENLDFPDEPDESGGGAVSVEEK KKRNEDYKHRLQISYNLSLLMGLPPERSSTWLPDWKERVETYLTRCDSCIRRWHRAREPF LQRLPECLRPEHIRVMETHLDDFDRVRIDRGLKEAREILERNGPMTTTKLVQHSISAVLA LFEALCSWKYLAFKDRIQDFDYVFENTQRKKPAKLPGGLLPSMTSFLFSESKYKRDFAEA AWDRREPESLKQDEWDWAVSPWLTESILWVSMSRGGNTPDKIPRFWRGFSKILRLLGEKQ IVNWLRAMEVSPNIYFLALEHLMTDSDEALLSVLQGLQGLMEKAPKAFWAAFAQLSPSTL VEQIFMSPGFRPLLNNSLLPERMESGGDSGDKVPALAGWLMAFIRSLPQIQRSDACDTVL QHLLSTFRQDPSCDRSAHATCTLSGLVALHECLKGFLDPENPFDTQTSLITVNQLLNKVL QYGEVIIGAGKLRPGDTYNIGLSKAGIAIIHSALALDARATEIEWKALVDRRPVQNIMNR DSGKLWESFLEMLWPSQLGHFELAEAMLQATLPLRAIEKFIPKRKEKLKKEHEVFNNRYQ QQTAAIGKVLNRMTDFTQSELANLCSSYGRTIQAIVSSLIHGEEAIREAGFELIKAITDE MVRSDAIERMVERHFQPFVQAITNAVETISAYKGEGAPWTHMIPILQCSDFVLNGLCDPS SGQLRRKTLTADERAVVKSWWRSVWRAIDHSFRMMRKWHEMVEKKVMEDFCRDVMELANK LFEQDGVLASALSHQESSETGIPASDAMRDVLEPPRFYSFSLVDMLQLRDQYLISGIIRI VKQLITRMKQQDMALPPNTLLHLGKMIKDAKRSHGARPEYPTKTNLTDEQRIELLKALGE DAVIEEQFMGIKPGEKEARERALKQSKLDFFKATSKDYKDPLLSLTPTYDKNKSKLEQLK SEIVKPKQPTVLSPAAISAKQASLKEARAREKAEKAKRDAEAIAKARALRAPTKIVAGEG SGLQGIAGAKGKDHAPALKDEIMVGSSSEDEDESDDDDEVIVLKAKKANKTLSEADQRRL ELLMAKNRGPVKKVKLMRSAKDMRARLIPPMDTLHLAILEWDIFHEGNDPPNGYRCAEVS NTYNDPVSYKQTFFPLLINEAWRSFVTAKDETTSKQFGIKVLSRMAVDKFVEVTASVPAA VSKDRGLSEGDIVLMSRGEDPLNQPEELHCLSRIWKTTYKKDIVEVVYRLNGRGNPIHQV LVPGSEFSVVKITNMTTIEREYAALESLQYYDLMDEVLKAEPSPMLNFGDQAIKGVMDNY QLNLGQAKAILNAKENDGFTLVQGPPGTGKTKTIVAMVGCLLSNSLKGSNGAVSISRPGL TAKPTTAPARKLLVCAPSNAAVDELVLRLKQGVKTMNGTHHKIEVLRLGRTDAINAGVKD VTLDEQVKARMEAVINSSGPSDREQMHKEAGEIKVKLSELRPQLDAAQAADDHQLMNKLK REYDDLMKRRAHIGARIEADKSSGNTFQREVEIKRRQVQQEILDKAQVLCATLSGSGHEM FKNLNVEFETVIIDEAAQCVELSALIPLKYGCSKCILVGDPKQLPPTVLSQSAARYGYDQ SLFVRMQKNHAKDVHLLDMQYRMHPEISRFPSKEFYEGLLQDGADMAGLRLQPWHQSVYL GPYRFFDVKGSQSRGPKNQSLVNEEELKVAMKLYQRFRSDYSNVDARGKIGIITPYKAQL HRLRQRFTDKYGEGITEEIEFNTTDAFQGRECEIIIFSCVRASPTGGIGFMTDIRRMNVG LTRAKSSLWILGDSRALQQGEYWNKLIEDAKERDRYTTGNILAMLDSRGPQLPAAAFKQL GAPPPAPSRPRPTEDVEMPDAPSSNVEMPDAPPANLPYRRPSGPRDDMPPTIQPTVGSTG KKRARDSNDDGRPSKKIQQNANAARHNMNAAPPVMPRAATVKPPIDPSAMEVLGLAPPER PPAAQPPRPQQWGQQPQVANGPGPGQGPRPNGPPNGQGQRPSGPPPGSRGPVPPARKPAS DPFIRRKPGPRR NT seq 6159 nt NT seq  +upstreamnt  +downstreamnt atggagggcaatctcgaacagaccatcatcgaatggcacaatgatttcgaagacttccca cccgacgctcacctgtgctgcccgaaattaaacgacgatgatctcaccgactatgagaac ctcgactttcccgatgagcccgacgagtctggcggcggcgccgtgtccgtcgaggaaaag aaaaagcgaaacgaggactacaagcatcgcctccagatatcatacaacctcagcctcctg atgggactcccgccagagcgctcgagcacatggcttcctgattggaaggagcgtgttgaa acataccttacacggtgcgactcatgcatacgacgctggcaccgagcacgggaacccttt ctgcaacgcctccccgaatgcctgcgccctgagcatatccgtgtcatggaaacccacctg gacgatttcgacagggtacgcatcgatcgtgggttgaaggaagccagagagatacttgaa aggaatggtccgatgacaacaacgaagttggtccagcacagcatctcggcagtcttggct ctcttcgaggcactctgcagttggaagtatcttgcgttcaaggatcgcatccaggacttt gactatgtttttgagaacacccagcgtaagaagcccgccaaactgcctggcggtttgctt ccatcgatgacgtcctttctcttctccgagtcaaagtacaagagggactttgccgaggcc gcttgggaccggcgagaacccgaaagcttgaagcaggacgagtgggattgggccgtatct ccctggttgacagagtcaatcctgtgggtttcgatgagcagagggggcaacactccagat aagatacccagattctggcggggcttttcgaaaatactgcggctgttgggcgagaaacaa attgtgaactggcttcgagcaatggaggtctcgcccaatatttattttcttgccttggag cacttgatgacggattcagacgaggccctgttgtcggtcttgcaaggactccaaggtctc atggaaaaggcacccaaagcgttttgggctgcgtttgctcagctttcgcccagcaccttg gtggagcaaatcttcatgagcccaggctttcgtccgctcctgaacaattcgcttctgccc gagaggatggaatcgggaggtgacagtggcgacaaggtaccggcattggctggctggcta atggccttcatacgttcactgccgcaaatccagcgctcagatgcatgcgatactgttttg cagcatctcctgagcacgtttcggcaggatccgtcgtgcgaccgctcagcacacgctact tgcactctctcgggtttggttgctctccacgaatgcttgaagggcttcttggacccagag aacccattcgacacacagacatccctcatcacggtcaatcagctgctgaacaaagtactc cagtatggtgaagtcatcattggggccggaaagctgaggcctggggacacatacaacatc ggtctctccaaggccggcatagccattattcactcagctttggcccttgatgcgcgagcc acggagatcgaatggaaggccctagttgatcgccggccagtccaaaatattatgaatagg gattccgggaaactgtgggagtcttttcttgagatgctctggccctctcagctcggccat ttcgaactggcagaagctatgctacaagctaccctgccgctacgtgccatcgagaagttc atccctaagcgaaaggagaagctcaagaaggaacacgaggtattcaacaatcgatatcaa caacaaacagctgctattggaaaagtcctgaaccgcatgaccgactttacgcagtcagag ctagcaaacctgtgctccagttatggcaggacgatccaagccatcgtgtcatcgctcatc catggcgaagaggcaattcgcgaagctggctttgagctgatcaaggccataactgacgaa atggttcgtagcgatgccattgaaaggatggtggagaggcatttccagccgtttgtgcaa gctatcaccaatgctgttgaaaccatctcggcgtacaagggtgaaggtgcaccttggact cacatgatccccatcctccagtgcagcgacttcgtactgaatggcctttgcgatccatcg tccggtcagttgagacgcaagaccctgacggccgatgagcgggccgtcgtcaagagctgg tggagaagtgtttggagggccatcgatcactcgtttaggatgatgaggaagtggcacgag atggtcgagaagaaggtgatggaggacttttgtcgagatgtcatggagctcgccaacaag ctgtttgagcaagatggtgttcttgcctctgctctaagccaccaagagagcagtgaaact ggaatcccggcctcagacgccatgagggatgtcctcgagccgcctcggttctattctttc tcgctggtggacatgcttcagctccgtgatcagtaccttatctctggtattatcaggatc gtcaagcagctgatcaccagaatgaagcagcaggacatggcactgcctccaaacaccttg ttacacctgggcaagatgatcaaggacgccaagcgatcacatggcgccaggccagagtat cctactaagacaaatctgacggacgagcagcgcattgaactactcaaggctctcggagag gatgccgtgatcgaggagcagttcatgggcatcaaacccggcgagaaagaggctagagag cgcgctctcaagcagagcaagcttgacttcttcaaggcgacctccaaggactacaaagat cctctgctcagcctcacaccgacgtatgacaagaacaagtcgaagctggagcagctgaag tccgagattgtcaagcccaagcagccaacagtgcttagtccagccgctatttctgcaaag caggcctctctcaaggaggcgcgagctagggagaaggccgagaaggccaagcgtgacgcc gaagctattgccaaggccagagctttgcgtgcgccgacaaagattgtggcaggtgaaggc tctggtttgcaaggcatcgctggtgcaaagggcaaagaccatgccccggcgttgaaggac gaaatcatggttgggtcgtcttcggaggacgaggacgagtcggatgatgatgatgaggtg attgttctcaaggccaagaaggcgaacaagaccttgagcgaggctgatcaacgtcgtctt gagctcttgatggcgaagaaccgcggacctgtgaagaaggtcaagctcatgcggtccgcc aaggatatgcgtgctcgtttgatccccccgatggacacacttcaccttgcgattcttgaa tgggatatttttcatgaagggaatgaccctccaaatgggtatcgctgtgcggaagtctcc aacacgtacaacgatcccgtcagctacaagcaaacgtttttccccctgctcatcaatgaa gcctggcggtcgttcgtgacggccaaggatgaaactacctcgaagcaatttgggatcaag gttttgagtcgtatggcggttgacaagtttgtcgaggtcacggcttcggtgcctgctgcg gtttccaaagaccgtggtctctcggaaggcgacattgttttgatgtcaagaggagaggat cccttgaaccaaccggaggagttgcattgtctttctcgtatctggaagacaacctacaag aaagacatcgtcgaggttgtctatcggttgaatggtaggggaaatccaatccatcaggtc cttgttccgggtagcgagttctcggtggtcaagatcaccaacatgaccacaatcgagcgc gaatatgctgctctggaaagcttgcagtactatgacttgatggatgaggttctcaaggct gagccgtcgccgatgctcaactttggcgatcaggctatcaaaggggtgatggacaactac caactcaatcttgggcaagcaaaggccatcttgaatgcgaaggagaatgatgggtttact ttggtacagggccctccgggtacgggcaagactaaaaccattgtcgccatggttggctgc ctgttgtcgaactctctcaagggttccaatggtgccgtcagcatctctcggccgggactc acggcaaaacccaccacagccccggccaggaagctgcttgtctgtgcccccagtaacgca gccgtggatgagctggtcttgcgtctcaagcagggcgtaaagacaatgaacggaacccac cacaagatcgaggtgctgcgtctcggtcgaactgacgctatcaacgctggtgttaaagac gtgaccctggatgagcaagtcaaggcacggatggaagcggtgatcaacagcagtggaccc agcgaccgcgagcaaatgcacaaggaagctggcgagatcaaggtcaaactctccgagctt cggccacagcttgatgctgctcaagctgccgatgatcatcagttgatgaacaagttgaag agagagtacgacgacctgatgaaacgccgtgcccacatcggagctcgcatcgaggccgac aagagcagtggaaacacgttccaacgtgaggtcgagatcaaacgccgacaggttcagcaa gaaattctcgacaaagctcaggtcttgtgtgccacactgagcggtagcggccacgagatg ttcaagaatctcaatgtcgagtttgagacggtcatcattgatgaggcggcccaatgtgtg gagcttagtgcactcattccgctcaagtatggctgctcaaaatgcattctggtcggtgat cccaagcagctgccgcctaccgttctctctcagtctgctgctagatacggctacgaccag agcttgttcgtccgcatgcaaaagaaccacgccaaagatgtccacctgctcgacatgcag tatcgcatgcaccccgaaatcagcaggttcccaagcaaggagttttacgaagggttgctc caagacggcgccgacatggcaggcttgcgtctccagccgtggcaccagagcgtctatctt ggcccttaccggttctttgatgtcaagggttcgcaatcgcgtgggcctaaaaaccagtcc ctggttaacgaggaagagctcaaggtagctatgaaactgtaccagcgcttccgctctgac tacagcaacgtcgatgccagaggcaagatcggcatcattactccctacaaggctcagctt cacagattgcgacagaggttcaccgacaagtatggtgagggcattacagaggagatcgag ttcaacactaccgatgcgttccagggtcgtgagtgtgagatcatcatcttctcttgcgtt cgtgccagcccgactggtggtatcggtttcatgactgatattcgccgcatgaacgtcggt ctgacacgtgccaagtcatccctgtggattttgggcgactcccgggcgcttcagcagggt gaatactggaataagctcattgaggacgccaaggagcgtgaccggtacaccaccggtaac attctggccatgctggacagccgtggtccgcagttgccagctgccgcctttaaacagctg ggtgccccccctcctgcaccatctcgcccacgcccaaccgaagatgttgagatgcctgat gcgccttcttctaatgtggagatgcctgatgcgcctccagccaacctgccatatcgtcgc ccaagcggtcctcgtgatgacatgccgcccactatccagccaacggttggatcaacagga aagaagcgggcgcgcgatagcaacgacgacggccgcccgtccaaaaagattcaacagaac gcgaatgcggcgcgtcacaatatgaatgccgctccaccagtcatgccgagagcagccacg gtgaagccacccatcgacccgtcagctatggaggtgttgggcctggcgcccccggagagg ccacctgcggctcaacctccacgtccgcagcaatggggtcagcagcctcaggtggcgaat gggccgggaccaggacagggcccgagaccgaacgggccgcctaatggacagggccagagg cctagtggacccccgcccggatctaggggaccggtaccgccagcacgcaagccagcgagc gacccctttattaggcggaaaccagggccaagacgttaa

DBGET integrated database retrieval system