Podospora pseudocomata: QC762_201130
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Entry
QC762_201130 CDS
T09797
Symbol
RFA1
Name
(RefSeq) Replication factor A protein 1
KO
K07466
replication factor A1
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03030
DNA replication
ppsd03420
Nucleotide excision repair
ppsd03430
Mismatch repair
ppsd03440
Homologous recombination
ppsd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QC762_201130 (RFA1)
03420 Nucleotide excision repair
QC762_201130 (RFA1)
03430 Mismatch repair
QC762_201130 (RFA1)
03440 Homologous recombination
QC762_201130 (RFA1)
03460 Fanconi anemia pathway
QC762_201130 (RFA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppsd03000
]
QC762_201130 (RFA1)
03032 DNA replication proteins [BR:
ppsd03032
]
QC762_201130 (RFA1)
03400 DNA repair and recombination proteins [BR:
ppsd03400
]
QC762_201130 (RFA1)
Transcription factors [BR:
ppsd03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
QC762_201130 (RFA1)
DNA replication proteins [BR:
ppsd03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
QC762_201130 (RFA1)
DNA repair and recombination proteins [BR:
ppsd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
QC762_201130 (RFA1)
MMR (mismatch excision repair)
QC762_201130 (RFA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
QC762_201130 (RFA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
zf-like
Motif
Other DBs
NCBI-GeneID:
87906912
NCBI-ProteinID:
XP_062746777
LinkDB
All DBs
Position
2
Genome browser
AA seq
631 aa
AA seq
DB search
MAEQAITQGAIEAIFSDPERARAQYPVPVLQCLQIKTLDSKGGGAPERYRIVLSDVRNYV
QCMLATQANHVVHEGKLKRGGIVRMKSYQAQALKGKNVLIVLELEAIESLGAPDKIGNPV
GLEGGAKLEEAQPAAAAAAAPAFYGAPKGEPTQESKSQVQRQLASRPTNNNHNNNTRTSG
GVSSTIYPIEALSPYAHKWTIKARLTHKSDIKTWHKNNGEGKLFSVNLLDESSEIKATMF
NDQVDQFYDVLQEGQVYYISAPCRVQLAKKQFSNLPNDYELTFERDTVVEKAEDQSSVPQ
VRFNFCNIQELQSVEKDATVDVLGVLKTVHEVSSITSKSTQKPYDKRELELVDQTGYSVR
VTVWGKTATEFQGKPEEVIAFKGTRVSDFNGRSLSLLSSGTMAIDPDIPEAHALKGWYDS
TGRHSDFATHSNMSSVGAAAGRTNEILMIQQVKEKDVGFDKPEYFSVQATIVHVKQDNFC
YPACRSEGCNKKVTDMGDGTWRCEKCDVTHDRPEYRYILNFNCSDHTGQIWLSCFDEQGR
KLLGASADELMEWKQIKESGDASDEARKEAEVRFTTAFDSANCRKMTFRARAKMDTYGEQ
QRVRYQLMEATPLDYKMEGNRLAEMIRQLGV
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcaagcgatcacacaaggtgccatagaagccatcttttccgatcctgagcgc
gcccgtgcccagtatcccgttccggttctgcagtgcctccagatcaagaccctcgactca
aaaggcggcggtgcgccagaacgataccgcatcgttctcagcgatgtccgtaactatgtg
cagtgcatgctggccacccaggccaaccatgtcgtacacgaggggaagctcaagcgtgga
ggaatcgttcgcatgaagtcataccaagcccaggccctcaagggcaagaacgttcttata
gtattagagctcgaggccatcgagtcccttggtgcgccggacaagattggaaaccctgtt
ggcttggaaggaggagcgaagcttgaagaagctcaacctgctgctgctgctgctgctgcg
cccgccttttatggtgcccccaagggcgagccgacccaagagtccaagtcccaggtccag
agacaactggcgtcacgccccaccaacaacaaccacaacaacaacactcgcaccagcgga
ggtgtcagcagtaccatctatcccatcgaggcactatccccctatgctcacaagtggacg
atcaaggcgagactcacccacaagtcggacatcaagacatggcacaaaaacaacggcgaa
ggaaagctttttagcgtcaacttgttggacgagagcagcgagatcaaggccaccatgttc
aacgatcaggtcgaccaattctacgatgttcttcaggagggccaggtgtactatatctct
gcaccctgcagagtccagcttgcgaagaagcagttcagcaaccttcccaacgactacgag
ctcacgtttgagcgggatacagttgtcgagaaggctgaagatcagagctcagtaccacag
gttcggttcaacttctgcaatatccaagagctccaaagcgttgagaaggacgccacggtt
gatgttctcggtgtgctcaagacggtgcatgaggtctcatcgatcacatccaagagcact
cagaaaccatacgacaagcgtgagttggagctggtggaccaaactggctactcggtgcgt
gttaccgtttggggcaagacagctaccgagttccagggcaagccggaggaagtcattgcg
ttcaagggcacccgtgtcagtgacttcaacggcaggagtttgtctcttttgtcatctggc
accatggccattgaccctgatattccagaggcccatgctctcaagggctggtatgactct
accggcaggcacagcgacttcgcgacacatagtaacatgtcgtcagtcggtgctgccgcg
ggtcgcaccaacgagatcctgatgatccagcaggtgaaggagaaggatgttggctttgac
aagcccgaatacttttccgttcaggccaccattgttcacgtcaagcaggacaacttctgc
tacccggcgtgccgcagtgagggttgcaacaagaaggtcaccgacatgggtgacggcacc
tggcgctgcgagaaatgcgatgttacgcacgacaggccggagtatcggtacatcttgaac
ttcaactgcagcgaccacactggccagatctggctgagctgcttcgatgagcagggcagg
aagttgctgggcgcgtcggcagatgagctcatggagtggaagcagatcaaggagtctggt
gatgcttcagatgaggccaggaaggaggcggaggttcgatttaccactgcgtttgatagt
gcaaactgcaggaagatgacgttccgggctcgggccaagatggatacgtatggtgaacag
caacgggtgcgctatcagcttatggaggcgacgccattggattacaagatggaaggcaac
cggttggcagaaatgatcaggcagctgggtgtgtag
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