KEGG   Podospora pseudocomata: QC762_205828
Entry
QC762_205828      CDS       T09797                                 
Symbol
LSM5
Name
(RefSeq) RNA-binding protein lsm5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
ppsd  Podospora pseudocomata
Pathway
ppsd03018  RNA degradation
ppsd03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ppsd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    QC762_205828 (LSM5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    QC762_205828 (LSM5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppsd03019]
    QC762_205828 (LSM5)
   03041 Spliceosome [BR:ppsd03041]
    QC762_205828 (LSM5)
Messenger RNA biogenesis [BR:ppsd03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     QC762_205828 (LSM5)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     QC762_205828 (LSM5)
Spliceosome [BR:ppsd03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    QC762_205828 (LSM5)
SSDB
Motif
Pfam: LSM SM-ATX LSM14 LSM12_LSM
Other DBs
NCBI-GeneID: 87907385
NCBI-ProteinID: XP_062745592
LinkDB
Position
2
AA seq 86 aa
MASQLLPLELIDKCVGSRIWVIMKGDKEFSGTLVGFDDYVNMVLEDVTEFDYSGNNTQLK
KILLNGNNICMLIPGGEGPGGAGGSP
NT seq 261 nt   +upstreamnt  +downstreamnt
atggcctcccaactcctcccactcgaactcatcgacaagtgcgttggctcccgcatctgg
gtcatcatgaaaggcgacaaggaattctccggcaccctcgtcggcttcgatgattacgtc
aacatggtcctcgaagacgtgacagaattcgactactctggcaacaacacccaactcaag
aagatcctcctcaacggcaacaacatctgcatgttgatcccaggaggagaagggcccggc
ggagcgggtggttcgccatga

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