Podospora pseudocomata: QC762_209240
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Entry
QC762_209240 CDS
T09797
Symbol
utp13
Name
(RefSeq) U3 small nucleolar RNA-associated protein 13
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
QC762_209240 (utp13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppsd03009
]
QC762_209240 (utp13)
Ribosome biogenesis [BR:
ppsd03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
QC762_209240 (utp13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_Prp19
Utp13
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
WD40_MABP1-WDR62_2nd
WD40_Gbeta
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
ANAPC4_WD40
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_IP5PC_F
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
87907735
NCBI-ProteinID:
XP_062745998
LinkDB
All DBs
Position
2
Genome browser
AA seq
909 aa
AA seq
DB search
MATRQAAKTTFEVGNVIQPIYTGGSVALENGARILASTLGENAVLTELTTGKNLAEIEGD
GEPISTLAITPSGSHLIVCSRSLTMRIYALTVSPEFDSIETTLVRTSKPHATPVVVLAVD
RTSTLLATGAADGAIKIWDIVGGYVTHTVSGPSVLISALHFFEIAATAADTTIDRRPKKG
SRKNDQDDGTNGVDSKFRLAWGTQDGKVRIFDLHKRTATPVYSDAKRKREAHESNVQSID
YSPEQHALLTGSRDKTMTMWLWGENGWQGTPMLRHELVESVGFLNEGKWMYSAGESGLLR
IWDSTTHQEITAKQDPKADGEAILSTVYLPEKSLIVCAQADYTLALYQVPKAEDISASAG
EFFWEPFRRISGTHDEIYDLVYLLRDQSMMALATNSEDIRIVSVKTDGGEEGGSYFGHDV
ALLKGHEDLVMSLDVDWSGHWVASGAKDNTARIWRVDSANNSFECYATFTGHLESVGAVS
LPKVAPPEDSEAFKNPLDHPPAFLISGSQDRFVQKRLIPRPSQPFKETTSLRRLAHEKDI
NALDINPSGKLFASASQDKTVKIWDTERLEVQGILKGHKRGVWAVKFAPLHTPAIQGETG
GAVSGKGVIVTGSGDKTIKLWNLSDYTCLRTFEGHSHNVLKVVWLHIPTVEEDPSRKNVH
FASAGADSLVKIWDANTGETECTLDNHEDRLWTLAVHPKSNTIVSAGSDSKITFWKDTTS
ETQTAATEAATRLVEQEQELENYIHIGAYRDAIVLALQLNHPGRLLKLFTNVVTSPTPEA
GSFTGLRAVDQVLASLSDEQLFLLLLRLRDWNTNARTAPVAQRILSALVRSYPADKFSGL
SVKGARGQKSLKEVLNALKVYTERHYKRMEELVDESYLVEYTLREMDALAPSLKAVKEDG
EGDVDMIEV
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggccacacgacaagcagcaaagaccaccttcgaggttggaaatgttatacagcccatc
tataccggaggatctgttgcgctcgaaaatggcgccagaatcctcgcctcgacactaggc
gaaaacgcggtgctcaccgaattgacgactggaaagaacctggccgagattgaaggagat
ggcgaacccatttcgaccctggccattacgccttcggggtcgcacttgattgtgtgctcc
cggtcgctgacgatgcgaatctacgccctcacagtctccccagaattcgactcgatcgaa
acgacactcgtccgaacctcgaagccacatgccacccctgtggttgtgctggccgtcgac
agaacaagcacattgttggctactggtgctgccgatggcgccatcaagatttgggatatt
gttggaggatatgtaacccacaccgtcagcggaccgagtgttctcatttcagccctgcac
tttttcgagatcgccgcgaccgctgccgacaccacaatcgaccgaaggcccaagaagggc
tcgcgaaagaacgaccaggatgacggcaccaacggtgtcgactccaagtttcggctggcc
tggggcacacaagacggcaaggtccgcatcttcgatcttcacaaacgtaccgcgactccc
gtatactccgatgcgaaaaggaaaagggaggcgcacgagtctaatgttcagagcatcgac
tactcgcccgagcagcatgctttgctcacaggcagcagagataagacgatgacgatgtgg
ctttggggggagaatggctggcagggaacgccaatgctgcggcacgagttggtggaatct
gtagggttcttgaatgaagggaagtggatgtactcagccggagagagcggtctcttgcgg
atatgggactcaactacacaccaggaaatcactgcgaaacaagaccccaaggcggatggc
gaggctattctttcaaccgtctacttgccagagaagtccttgattgtgtgcgcccaagcc
gactacacactcgccctctatcaggtcccgaaagcagaagatatcagtgcgagtgcggga
gagttcttctgggagccgtttagacggatatccggcacacacgacgaaatctacgacttg
gtctaccttctacgagatcagtccatgatggcacttgcgacgaactcggaggatattagg
atagtatctgtcaaaacagatggcggggaggagggcggttcctatttcgggcacgacgtt
gccttgctcaagggacatgaggatctcgtcatgtcactggatgtggattggtctggtcac
tgggtggccagtggagcaaaagataacacagccagaatatggagggttgattctgccaac
aattcttttgagtgttatgctaccttcactggtcacctggagtcggtgggagcagtgtct
ttgcccaaggttgctcctccggaagactctgaggcgttcaagaaccctctcgaccaccct
ccagcattcctgatttccggttcccaggacagatttgtccagaagcgacttattccccga
ccatcacaaccgttcaaagagacaactagtctcaggagattggcgcacgagaaagacatc
aacgccctggatatcaacccatccggaaagttattcgcttctgcgtcacaggacaaaacg
gtcaagatttgggacacagaaaggctcgaggtgcagggtatcctcaagggccacaagaga
ggtgtatgggcggtcaagtttgctcccctccatactccagccatccaaggcgagacaggt
ggtgctgtctctggaaagggtgtcatcgtcactggcagtggtgacaagactatcaagctg
tggaatctttctgactacacgtgtcttcgcacctttgaaggacactcccacaacgttctg
aaagtggtgtggttgcacatccccacagtcgaggaggatcccagcagaaaaaatgtccat
ttcgcttccgctggcgctgacagtctcgtcaagatctgggacgccaacacgggcgaaaca
gaatgcacccttgacaaccacgaagacagactgtggaccttggccgtgcacccgaaaagc
aacacgattgtctcggctggctccgactccaagattaccttctggaaggacaccacatcc
gaaacccagaccgccgccaccgaagccgccacccggcttgttgagcaggagcaggagttg
gagaactacatccatatcggtgcctacagagatgccatcgtcttggctctccagctcaac
cacccaggccgcctgctcaagcttttcaccaacgttgtcacctcgcctactcctgaagcg
ggtagcttcaccgggctgagagctgtcgaccaggttcttgctagcttgtcagatgagcag
ctgttccttttgttgctgaggttacgagactggaacacaaacgcgcgcacggcacctgtt
gcgcagcggattctctccgcgctggtgaggagctatccggctgataagttctcgggcttg
agcgtcaagggagcgagggggcagaagagcttgaaggaggtgcttaatgcgctaaaggtc
tacacggagagacattacaagaggatggaggagctggtggatgagagttatttggtggag
tataccttgagagagatggatgctctggcgccgtcgctgaaggcggtgaaggaggatggg
gagggggatgtggacatgattgaggtgtaa
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