Podospora pseudocomata: QC762_211000
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Entry
QC762_211000 CDS
T09797
Symbol
CSL4
Name
(RefSeq) exosome 3'->5 exonuclease subunit ski4 (Csl4)
KO
K07573
exosome complex component CSL4
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QC762_211000 (CSL4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsd03019
]
QC762_211000 (CSL4)
Messenger RNA biogenesis [BR:
ppsd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
QC762_211000 (CSL4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
QC762_211000 (CSL4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
S1
Motif
Other DBs
NCBI-GeneID:
87907906
NCBI-ProteinID:
XP_062746187
LinkDB
All DBs
Position
2
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AA seq
218 aa
AA seq
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MTTSNPTLAIPGQLLGSTSRYQPGPGTHIHNHNVHASLMGTVHIAQPAKAPGPVKRLTKI
TPAPAPAELPTISVTVPTRSAGSDHAGQKKREVLPEVGNVVLCRVIRITPRQAVVAILVC
GDTVLDAEWQGLIRVQDVRATEKDRVKIYESFRPGDIVRAEVISLGDQANYYLSTARNEL
GVILATSEAGNAMHPVSWKEYRDPETGLTELRKVAKPY
NT seq
657 nt
NT seq
+upstream
nt +downstream
nt
atgacaacatcaaaccccaccttggccatcccaggccagctcttgggttcaacatccaga
taccagcccgggccagggactcacattcacaatcacaacgttcatgcttcgctcatgggc
acagtacacatcgctcaacctgctaaagctccaggaccagtaaagcggctcacaaaaatc
acaccggccccggcccctgcggagctccccacaatctcggtgacggtccccacgcggtcc
gcgggctccgaccacgccggccaaaagaagcgcgaggtgctgcccgaggtagggaatgtg
gtgctctgcagagtgattcgcatcacaccgaggcaggctgttgttgcgatactggtgtgc
ggcgacacggtgctggatgctgaatggcagggcttgatccgtgtgcaggatgtcagggct
acagagaaggacagggtcaagatctatgagagcttcagaccgggggatatcgtcagggct
gaagtgatctcactgggtgaccaggctaactattatctttccactgctcgtaatgagctg
ggtgttattttagccacgagtgaagccggcaatgcgatgcatcctgtcagttggaaggag
taccgggacccggagaccggcttgactgagttgagaaaggttgcgaagccatattga
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