Podospora pseudocomata: QC762_304250
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Entry
QC762_304250 CDS
T09797
Symbol
NMD2
Name
(RefSeq) mRNA decay protein
KO
K14327
regulator of nonsense transcripts 2
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03013
Nucleocytoplasmic transport
ppsd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
QC762_304250 (NMD2)
03015 mRNA surveillance pathway
QC762_304250 (NMD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsd03019
]
QC762_304250 (NMD2)
Messenger RNA biogenesis [BR:
ppsd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
QC762_304250 (NMD2)
mRNA cycle factors
P-body specific factors
QC762_304250 (NMD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
87908628
NCBI-ProteinID:
XP_062744624
LinkDB
All DBs
Position
3:complement(1525330..1530453)
Genome browser
AA seq
1145 aa
AA seq
DB search
MDRARRRELRELNQRVWNGEKDLFPVGKSLDSTMKKNTAFIKRLRTAISPATMNTFLQEI
KTVSLSKYLSEIVSACHEGLCKLKSPGEIEAGVEIVSALHQRFGPDEFTMYLGWYLGKAM
ATPDKSFLKTLSAEAKEKEERDRLTRQRVLLRVVTELWLVGILKTLDDIKRPDDAANGTT
GKTTEVKSRAAAKGAAAEPFPLEVLKDLLGHDREHANLPLLVIFVKAFSWDILGVKSDSR
KTVGEDGTTKEDETNEEQDGTTEEDAPFTSPELQERFRNVLRRYFEDVKGHLVRDQKAIF
SQSRKNAEAYVKSGEVFEDRQANFEKQVKAQERLVANAHVIAEIIGAEMPELKDSDDANA
NANGSIGIVKAGEYLRGQGDGSGIWEDEEERRFYENLVDLKGKVPGMLLEEVKKKKAEDE
QVGKKIDPAEVEAKQAEAAVDEQSMAIANKTIGAQVDALLARLPDLTSKDAIDQTAIDFC
FLNSKASRNRLIKALTDVPKGRGDLLPSWSRLVATLGQYMPDIPKGLVDYLDAEFRSLQR
RKEKEFLGQVRLGNIRYLAELTKFGIVPEHVVFHCLKVSLDDFSRMNIEIICNLLENCGR
YLLRNPETSPRMASFLETLQRKKSVQHIGQAERMLVENAVYYVDPPQRPAIQQKERTPIE
LFVRKLVYTDLTKRNYSKVVRQIRRLHWEEKEVVTILHKVLSKPGKVKYSNIHLLVVILS
AIHRYHNEFVISVIDTVIESVVFGLEQNNFEFNQRRIAEVKYLAEMYNYRMLDHPVIFEI
MYKIMTFGHGGPPIPGRLVSFDMPDDFFRIRLIATILETCGVFFNKGAAGKKLDYFLSFF
QYYIYTKDPLPMDIEFLVHDIFSLTRPQWKLASNLEEASEVFRLAVIQDHKTSGMDRIAE
QDDRTSAMSSDDEDGNDLQAGEQDDDDDEDAASDEGEAEESEHHGSYANSEYEEEEEIVV
TREEEEVDPEYEEEFEREYAKMMAESFGDARKFERKPQFDIPLPVRPKAREATGGEPAEA
ATTNPGGTMAFSLLTKKGNRQQTRTVELPSDSNFAVALINQRQAAKEEQQRIKNLVLNYD
LRENEENDGTTTLRDPLQLYSNIHNRAGNEKTNSYHHHNRIDNRAAKERGGQRVRKLQLS
DVDWT
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcgcgcgcagacgcgagctgcgcgagctcaaccagagggtctggaatggagag
aaggatctctttcccgtgggcaagtccctggactcgaccatgaagaagaataccgccttc
atcaaacgtctccgtaccgcaattagccccgcgaccatgaacacctttctccaggagatc
aagactgtcagcctctccaagtatctctccgaaatcgtctccgcctgccacgaaggcctt
tgcaaactcaaatcccccggcgagatcgaagccggcgtcgaaattgtcagcgccctccat
cagcgcttcggtcccgacgagttcaccatgtatctgggctggtatcttggcaaggctatg
gctacaccggacaagagcttcctcaaaaccctctcggccgaagccaaagaaaaggaggaa
cgcgaccgtctgactcgtcagcgtgtcctcctgcgcgtcgtgaccgagctttggcttgta
ggcattctcaaaaccctcgacgacatcaagcggcctgacgacgctgcaaacggaaccacg
ggcaagaccactgaggtcaagtcccgagcagctgccaagggagctgctgccgaaccgttc
ccgctggaagttctgaaggatctcctgggccacgaccgtgaacatgcaaatttgcctctg
ctggtgattttcgtcaaggcttttagctgggatattttgggagtcaagtctgatagtcga
aaaacagtgggggaagatggcaccaccaaagaggacgagacaaacgaagagcaggatggc
acgacggaggaagatgctcccttcacttctcccgagctccaagagcgctttagaaacgtt
ctcaggcgatattttgaggacgtcaagggccatcttgttcgggatcaaaaggccattttc
agccagtctcgcaagaacgccgaggcctacgtgaaatcgggtgaagtctttgaggaccgt
caggcgaactttgagaagcaggtgaaggcccaggagcgccttgttgccaacgcccatgtg
atcgccgagatcattggggctgagatgcccgagttgaaggatagcgatgacgccaacgca
aacgcgaacggctcgatcggcatagtaaaggcgggagagtacctccgtggacaaggcgat
ggctccggtatctgggaggacgaggaggaacgtcgcttttacgaaaacctggttgatctc
aagggcaaggttcccggcatgcttctcgaagaggtcaagaaaaagaaggccgaggacgag
caagttggtaagaagatcgatccggccgaggttgaggcgaagcaggcggaggctgcagtt
gatgagcagtccatggccattgcgaacaagaccattggtgctcaggttgatgctcttctt
gctcgacttccggatctcaccagcaaggatgccattgaccaaaccgccatcgacttttgc
tttctcaactccaaggcttctcggaacaggcttatcaaggccctcacagatgtgcccaaa
gggcggggcgatctccttcccagctggtctaggcttgtcgctacccttggccaatacatg
ccagacattcccaaaggtcttgtggactatcttgatgccgagttccgcagcctccaacgc
cgcaaagagaaggagttcttgggccaggtcagacttggcaatatccgctatcttgccgaa
ctgaccaagtttgggattgtccctgaacacgtcgttttccattgcctcaaggtcagtttg
gatgatttctctcgaatgaacatcgagatcatctgcaaccttttggagaactgcggccga
tacctgctccgcaacccagagacgtcgcctcgcatggcctccttcctggagactctccag
cgcaagaaatctgttcagcatattggacaagccgagcgcatgcttgtcgagaacgccgtg
tactatgtcgatcctcctcaacggccggccatccagcagaaggagagaacccccatcgag
ctctttgtccggaagctggtctacacggatctgaccaagcgcaactacagcaaggttgtc
cggcagatccgcaggcttcactgggaagaaaaggaggttgtgacaatccttcacaaggtt
ctttccaagcccggaaaggtcaagtacagcaacatccatcttctcgtcgttattctgagc
gccattcaccgctatcacaacgagttcgtgatcagcgttattgacaccgtcatcgaatct
gttgtgtttgggcttgagcagaacaactttgaattcaaccagcgcagaattgccgaagtc
aaatacctggcagagatgtacaactacaggatgctcgaccatcctgtaatctttgagatc
atgtacaagatcatgacctttgggcatggaggaccgcccatccccggccgtctcgtatcc
tttgacatgccagacgacttcttccggatccgcctgattgcgacaatcctggagacctgc
ggtgtgttcttcaacaaaggtgcagccggcaagaagctggattatttcctctccttcttt
cagtactacatctacaccaaggaccccctgccgatggacattgagtttttggtacatgac
atcttctcgctcactcgccctcagtggaagcttgcttcgaacttggaggaagcctcggaa
gtcttccggttggccgtcattcaagatcacaaaacctcaggcatggacaggattgccgag
caggacgacagaactagtgctatgtcgagcgacgatgaggatggcaatgatcttcaggcc
ggagagcaagacgatgatgacgacgaggacgcggcttccgatgaaggcgaggccgaggaa
tctgagcatcacggctcctatgccaacagcgaatatgaagaagaggaggagattgtggtc
accagagaagaggaggaagtcgaccctgaatacgaagaagagtttgagcgggagtatgcc
aagatgatggctgagagctttggggatgcgcgcaagttcgagcgcaaacctcagttcgat
attcccctccctgtccgcccgaaagcccgtgaggctacaggaggcgagcccgccgaggcg
gccacgaccaacccaggcggcactatggccttctctttgctcacgaagaaaggaaaccgt
caacagacacggactgttgaactgccttctgattccaactttgccgtggctctgatcaac
caacgccaggcagccaaggaggaacagcagcgcatcaagaaccttgtcctcaactacgat
ctccgcgagaatgaggaaaacgacggtactaccaccctccgggacccccttcaactatac
agcaatattcacaaccgtgcaggcaacgagaaaaccaattcgtatcaccaccacaaccgc
atcgacaacagagccgccaaggagcgcggtggacagcgcgtccgcaagctccaactcagc
gacgtcgactggacatga
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