Podospora pseudocomata: QC762_306570
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Entry
QC762_306570 CDS
T09797
Symbol
PCF11
Name
(RefSeq) mRNA 3' end processing factor
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
QC762_306570 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppsd03021
]
QC762_306570 (PCF11)
03019 Messenger RNA biogenesis [BR:
ppsd03019
]
QC762_306570 (PCF11)
Transcription machinery [BR:
ppsd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
QC762_306570 (PCF11)
Messenger RNA biogenesis [BR:
ppsd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
QC762_306570 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_C
Pfc11_Clp1_ID
zf_PCFS4
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
87908856
NCBI-ProteinID:
XP_062744881
LinkDB
All DBs
Position
3:complement(2305231..2308237)
Genome browser
AA seq
765 aa
AA seq
DB search
MEDHGDEVAADFREALQDLTTNARFEIVTLTNIARENADHGLAISEALTNHIKEAPASKT
LPALYVLDSIVKNVPTPYALYFGPKLYQIFMGSYTKVDNATRRKMDEMLKTWKEPVAGSI
SKKPVFPLELVRPIENALLAARNAYMEQAKFQTHLMRGRPAGPPARDTPTPPMGRAYQPP
PPPPPPHGQPPYQGPPNGQYPPPGEQAYPMRSGNTPNGVPNRATPPQPAPSAGPYAHYQP
PPNQGPYGVPPAPGINIDKLKDDIQQLIELDRAGFAQNMHDASKQNRLKALLDLQKVVQS
QNLPQEQLMIISDQVAKLAVNMRAAQAQPPPSYPPALPPPYNTHTPTPPVVTQQFAPPPV
AAAAPPPSVLPQLPAVLAAALGRPASNVAPVPVAAAPPPPVRPATTAGGAAPGTLSLDAI
LGQGALAALLAAKKPATPQQSSTAPVPPAAALPPALAALRSPPQQAAPFQPPPAPPVAQQ
QPPAAAANPLTQNPSALLAMLRQSGLLGGTPGVPTPPPAIPSLPPPDPNIITLTPASLKF
PRLHLLPYLLDHLGPPCSQCGRRFPTTEEGRKKKTQHMDWHFRVHQRVAEAEQRGQHRSQ
FVSELDWIQSHEEPDVDYNAPSGGGGSGDGDGSESDDNDWSAVVKGGRRKKNEKKKRWIT
APDEGDGTGTGTNKVCPICQEKFQSRYLEEVQDWVWMDAVVVGSGQGRRVFHGTCWDEVN
TGGGGGGQGQGTMVMLGNSNNKRKMKEEEEEGEEEEEEVGGGLRG
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggaagaccacggcgatgaagtggcggccgatttccgtgaggcgctccaggacttgacc
accaatgctcgctttgaaatcgtcacattgaccaacatcgcccgagagaacgccgaccat
ggtctggccatttcagaggccctcacaaatcacatcaaagaggcacccgcctccaaaacc
ctacccgccctctacgtcctggactcgatcgtgaagaatgttccgactccctacgcccta
tatttcggcccgaagctctatcaaatcttcatgggttcctacaccaaagtcgacaacgcg
acacggagaaagatggacgaaatgctgaagacatggaaggaacctgtagccgggtccatc
tccaagaaaccggtcttcccacttgaattggttcgacccatcgagaacgctctgctggct
gcccgcaatgcctacatggagcaagccaaattccagacccatctcatgcgagggcgtccg
gccggcccgcctgccagagatacgccgacacctcctatgggcagagcttaccaaccacca
ccaccaccaccaccaccacatgggcagccgccatatcagggaccacctaatggacagtac
ccgccgcctggagaacaggcctatcccatgcgctccgggaacacacccaatggcgtccct
aaccgtgctacgccaccgcagcctgctccatcagccgggccatatgctcactaccagcca
cctcccaaccaaggtccctatggtgttcctccagctccaggaataaacatagacaagttg
aaagatgatatccagcagttgatcgagctggacagggcgggttttgcccagaacatgcat
gatgctagtaaacaaaacagactgaaggctttgctggatttgcaaaaagtagtccagagc
caaaacctgcctcaggagcagttgatgatcataagcgatcaagttgctaaacttgctgta
aacatgcgcgctgcccaggcgcagccaccgccatcatatcctcctgctctgccaccacca
tacaacacgcacaccccaacacctcctgttgtaactcaacagtttgcacctcccccagtt
gctgccgctgctcctccaccttctgtactgccccaattaccagcggtactagcggcggct
ctgggacgtccggcatcaaatgttgctcccgtgcccgtggcagcggcaccaccaccacca
gtccgtccggcaaccaccgcaggaggtgccgctccgggaacactatcactcgatgcgatt
cttggccagggcgctctggctgcgcttttggcggccaagaaacctgccacccctcaacag
tcatctactgcgccggttccgccggcggcggctctaccacctgctttggccgcgctgcga
tcaccaccgcaacaagcagctccatttcaaccaccaccagcaccaccagttgctcaacaa
caaccgcccgctgcggcagccaacccgttgacacagaacccatcggctttattagctatg
ctacggcagtccggccttctcggcggcacccccggcgtacctacaccaccacccgccatc
ccatctctcccacccccggatccgaacatcataactctcacccctgcctctctcaaattc
ccccgcctgcatctgttgccttatctcctcgatcacctcggccccccctgctcccagtgc
ggccgccgcttccccaccacggaagaaggcagaaagaagaagacgcagcacatggactgg
cactttcgtgttcatcagcgtgttgctgaggctgagcaaaggggtcagcaccggtcgcag
tttgtgagcgagcttgattggattcagagtcacgaggagccggatgtggattataacgcc
cccagcggcgggggcgggtcaggagacggggatgggagcgagagtgatgataatgattgg
tctgctgtggtaaaaggggggaggaggaagaagaatgagaagaagaagaggtggatcacc
gcgcctgatgagggggatgggacggggacggggacgaacaaggtctgcccgatctgccag
gagaaattccagagtaggtatctggaggaggtgcaggattgggtttggatggatgcggtt
gttgttggatctgggcaggggaggagggtgtttcatgggacttgttgggatgaggttaat
actggtgggggagggggagggcaggggcaggggacaatggtgatgttggggaatagtaac
aataagaggaagatgaaggaggaggaggaggagggggaggaggaggaggaggaggttggg
gggggattaagaggttga
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