Podospora pseudocomata: QC762_309070
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Entry
QC762_309070 CDS
T09797
Symbol
rfc1
Name
(RefSeq) DNA replication factor C complex subunit Rfc1
KO
K10754
replication factor C subunit 1
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03030
DNA replication
ppsd03410
Base excision repair
ppsd03420
Nucleotide excision repair
ppsd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QC762_309070 (rfc1)
03410 Base excision repair
QC762_309070 (rfc1)
03420 Nucleotide excision repair
QC762_309070 (rfc1)
03430 Mismatch repair
QC762_309070 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppsd03032
]
QC762_309070 (rfc1)
03400 DNA repair and recombination proteins [BR:
ppsd03400
]
QC762_309070 (rfc1)
DNA replication proteins [BR:
ppsd03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
QC762_309070 (rfc1)
DNA repair and recombination proteins [BR:
ppsd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
QC762_309070 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
Rad17
nSTAND3
AAA_22
AAA_16
AAA_30
AAA_14
AAA_18
AAA_5
BRCT_2
AAA_28
AAA_33
RuvB_N
Motif
Other DBs
NCBI-GeneID:
87909109
NCBI-ProteinID:
XP_062745160
LinkDB
All DBs
Position
3:complement(3202142..3206289)
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AA seq
1078 aa
AA seq
DB search
MPDIRSFFAPKGGAAAAPSKPAPKKKEEEKKGRGKARKVVEDSDEDEEVVEVKKSTRSTP
RKKAAAPIEAKGTEISTSQYFASTKAKLAATTTSSTPKKAAAKPTPELPVRSSPRSKPAA
KPAPETKTKKPVTTYKKHTIHDDDAFVDNEDEDAGDDIFAADVRGNKRKKDDYEEEESEE
EPQPKPKRIASRSVKKVKDESEEDDFEPAPKKPVAKKPAAKKPAASAASKKRKSPVTDSE
ESEEEVVKKKPAPKKAAPAKPRATKAKKDADAEPDDVKDILANIPTIQAPDAPPKDPNWK
FDFKNKGGGGNAGPAPLAGTVDIPEGEEDCLVGKTFVFTGLLKTISREDGQALVKRYGGK
VTGAPSSKTDFVVLGDDAGPSKLRKIKEHNIKTIDEEGLFYLIKTMPAGGGGGKGSEAAR
KKLEQEEQKAREEAARMEEEEKIKRAEATRAAKAAAAARGTAAPAPQPTVPLTQLWTSKY
APTALNQICGNKANVERIQGWLKNWPKHKKYDFQKRGADGMGGYRAVIISGPPGIGKTTS
AHLAAKLEGYDVIESNASDSRSKKLVENGVMEVVNNTSLLGYFAGDGKTADAAKKKIVLV
MDEVDGMSAGDRGGVGALAKLCKKTEVPMILICNDRRLPKMKPFDHVAFDIKFQRPTVDQ
IRSRVMTICHREGLKMPLPVVNALIEGSGKDIRQIINMLATAKLDQTTMDFDQTKAMAKA
WEKHVILKPWDICQKIIGGGMFSSASKATLNDKIELYFNDHEFSYLMVQENYLRAKPSAI
GGVGMHPKEQNLKHLELVDMAAESISDGDLVDRMIHGPQQHWSLMPTHAVFSTVKPASYI
AGQFGAQPTFTSWLGNNSKYGKLSRYVREIHSHMRLKSSGDHNEIRQQYLPVLWRQLVKK
LELEGKEAVEDVIELMDSYYLTREDFDFIKELGVGEQDEEKVNIDTQTKSAFTRIYNQAS
HPVPFMRATNLPAQAKKMSRDVPDLEEAIEEEDDDEAAVAEPVDDEEEELDLSKDKYVKA
SKKKAAPKKAAAPKKTAAAKKKAAAAVVMDDDEAEEEDVPVRAKAKPAAKPGGRPKKA
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgcctgatattcggtcgttttttgcaccaaagggcggtgcggcggcggcgccatcgaag
cctgcgcccaagaagaaggaggaggagaaaaaggggcgcggcaaagcgagaaaggtcgtc
gaggacagtgatgaggatgaggaggtggtagaggtgaagaagagtaccagaagcacaccg
agaaaaaaggcagcggcgccgatcgaagccaagggcactgaaatctcgacatcacagtac
tttgcttccaccaaggccaaactagctgccactaccacgtcgagcacgccaaagaaggct
gccgccaaacccacgcccgagctccctgtgcgctccagcccacgatccaaaccggccgcc
aagcctgcccctgagacaaagacgaagaagccggtcaccacctacaagaagcacaccatc
cacgatgacgacgcatttgttgacaacgaggacgaggacgcgggagacgacatctttgcc
gctgacgtcagaggtaacaagagaaagaaggatgactacgaagaggaggaaagcgaggag
gagccacaacccaagcccaaacggattgcttcccgttctgtgaagaaggtcaaggatgag
tctgaggaggacgatttcgaacctgcgccaaagaaaccagtcgccaagaaaccagctgct
aagaaaccagctgcctctgccgcgagtaagaagcgaaagtcaccagtcaccgacagcgag
gagtcagaggaggaggtggtcaaaaagaagcccgctcccaagaaggcagcacctgcgaaa
cctcgcgccacgaaagccaagaaggacgctgatgctgagccggatgatgtcaaggacatt
cttgccaatattccgacgattcaggcacctgatgctcccccgaaggacccgaattggaag
tttgatttcaagaacaagggcggtggcggcaatgctggtccggctccgttggctggtact
gttgacattcccgaaggagaggaggactgccttgtcggcaagacatttgtcttcactggg
ctgctcaagacaatatcccgtgaagatggtcaagccctggtcaaacgatatggcggcaag
gtcaccggcgctccaagcagcaagacggactttgtcgtcctcggtgacgacgccggcccc
agcaagctcaggaagatcaaggagcacaacatcaagactattgacgaggaaggcctgttc
tatctcatcaagactatgcctgctggtggcggtggtggcaaggggtctgaggctgccaga
aagaagctcgagcaggaggaacagaaagccagagaggaagctgctcgcatggaggaggaa
gaaaagatcaagcgagccgaggcgacgagggctgccaaagctgctgctgccgcccgtgga
accgcagctccagctccccagccaacggtaccccttacccaactctggacatcaaagtac
gctcctactgccctcaaccagatttgcggcaacaaggcaaacgtagagaggatccagggt
tggcttaagaattggcccaagcacaaaaagtacgactttcaaaagaggggtgctgatggc
atgggtggttaccgagcagtcatcatctctggcccgccaggtattggcaagactacttcg
gcccacctcgccgccaagctggaggggtacgatgtcattgagagcaatgcttccgacagc
cgcagcaaaaagcttgttgagaacggggtcatggaggttgtcaacaacacctcgttattg
ggctactttgctggcgatggcaaaactgcggatgcggccaagaagaagatcgttctggtc
atggacgaggtggatggtatgtctgctggtgatcgtggcggtgttggtgcgctggccaaa
ctctgcaagaagactgaggtgcccatgatcctcatttgcaacgaccgccgtctgccaaag
atgaagccgtttgatcacgttgctttcgacatcaagttccaacgtccgactgttgatcag
attcgctctcgtgtcatgaccatctgccacagagaaggtctgaagatgcctcttccagtc
gtcaacgccttgattgagggcagcgggaaggacatccggcagatcatcaacatgctggcc
acggcgaaacttgaccagaccacgatggactttgatcagaccaaggcgatggccaaggcc
tgggagaagcacgtcatcttgaagccatgggacatttgccaaaagattattggcggtggc
atgtttagctctgccagcaaggcgaccttgaacgacaagattgagctgtacttcaacgac
cacgagttcagctacctgatggtgcaggagaactacctgcgcgccaagcccagtgctata
gggggtgtgggcatgcatccaaaggagcagaacctgaagcatcttgagctggtcgacatg
gcggctgagagcatcagcgatggcgatctggttgaccggatgatccacggtccccagcaa
cactggtctctgatgcctactcatgccgtctttagcaccgtcaagccggcctcctacatt
gccggccagttcggcgctcagcctacgtttacctcttggctgggcaacaacagcaagtac
ggcaagctgtcccgctacgtccgtgagattcactcccacatgcgtctcaagtcttctggc
gatcataatgagattcgccagcagtacttgcctgtgctgtggcgccagctcgtgaagaag
ctggagctggaaggcaaggaggcggtggaggatgtgattgagctgatggatagctactac
ttgacgagggaagactttgactttatcaaggagctgggagtgggtgagcaggacgaggag
aaggtgaatatcgacacgcagacaaagtcggcgtttacgaggatatacaaccaagcctcc
caccctgtcccctttatgcgggcgaccaacctccctgctcaagccaagaagatgagccgt
gacgtgcctgacttggaggaggcgattgaggaggaggatgatgatgaggcggctgttgcg
gagccggtggatgatgaagaggaggagttggacttgagcaaggacaagtatgtcaaggcg
tccaagaagaaggctgctccgaagaaggctgctgcgccgaagaagacggcggcggcgaag
aagaaggcggcagcggcggtggtgatggatgatgatgaggctgaggaggaggatgtgccg
gtcagggccaaggctaagccggctgcgaagcctgggggacggcctaagaaggcttga
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