Podospora pseudocomata: QC762_401700
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Entry
QC762_401700 CDS
T09797
Symbol
RPB2
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03020
RNA polymerase
ppsd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QC762_401700 (RPB2)
09124 Replication and repair
03420 Nucleotide excision repair
QC762_401700 (RPB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppsd03021
]
QC762_401700 (RPB2)
03400 DNA repair and recombination proteins [BR:
ppsd03400
]
QC762_401700 (RPB2)
Enzymes [BR:
ppsd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QC762_401700 (RPB2)
Transcription machinery [BR:
ppsd03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
QC762_401700 (RPB2)
DNA repair and recombination proteins [BR:
ppsd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
QC762_401700 (RPB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_5
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
AllG
Motif
Other DBs
NCBI-GeneID:
87909533
NCBI-ProteinID:
XP_062743150
LinkDB
All DBs
Position
4:complement(575999..580254)
Genome browser
AA seq
1278 aa
AA seq
DB search
MADYATQSQSYGGYGDEFDDDNNYENGDELGVDQDEAAITPEDCWDVISAYFDMKGLVSQ
QIDSFDEFTSSTIQSLVDEYADLTLDHPNPGDDQGRDIALRRYDIHFGNVMISKPTLTEI
SGETTSLLPYECRDRNLTYSAPMYCKVSKRARVAINEPVPLNELDDEQHELMRETGEHPM
TIRWEEEESDMPGEGSKGENDRGDLIFLGKLPVMVKSQICHLYGEDDESLFVLNECPYDQ
GGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLH
TKASNEKGRLANTVSVTLPYVREDVSLAIVFRALGIVSDEDILNHICYDRKDTQMLEALR
PCIEEAFCIQDREIALDFIGKRGNGNMGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRK
AFFLGYMVNKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKR
CLDTNKHFTLALGIKANTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSH
LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPADPI
VDFMTARGMDVLEEYEPLRAPNATKVFVNGTWVGVHNDPKQLVTLVQDLRRKNVISFEVS
LVRDIREREFKIFSDAGRVMRPLFTVEQEEKGNHGVEKGQLILNKDHIARLQRDKELGKY
HPDYWGWQGLLKSGAIEYLDAEEEETTMICMTPQDLDDFRMTKLGFHIETTSGQGNNRIR
TKVNKTTHMYTHCEIHPAMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRR
MDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSVVMNQSSIDR
GIFRSLFFRSYTDCEKRVGINIVEMFEKPTRGDTLRLKHGTYDKLDADGIIAPGIRVSGE
DIIIGKTSPINPDNAELGQRQQQHVKRDASTPLRSTESGIVDSVVLTTNQDGMRYVKVRV
RTTKIPQIGDKFASRHGQKGTIGLTYRMEDMPFTAEGITPDIIINPHAIPSRMTIAHLVE
CLLSKVATLKGLEGDATPFTDVTVDSVSDLLREQGYQSRGFEILYHGHTGRKLRAQCFFG
PTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLK
ERLFEVSDAYRVHICEICGLMTPIANLTKQSFECRPCKNKTKIAQVHMPYAAKLLFQELM
SMGIASRMFTSRSGISVR
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atggctgattacgcgacccagagtcagtcgtatggcggctacggcgacgagttcgacgat
gacaacaactacgaaaatggcgacgagttgggcgtcgatcaggacgaggccgccatcaca
ccggaggactgctgggatgtcatctcggcctactttgatatgaagggtctggtgtcgcaa
cagattgattcttttgatgaattcaccagcagcaccatccagtctctcgtcgacgaatat
gccgatctcacactcgaccatcccaatcccggtgacgaccagggcagagatatcgccctg
cggagatacgacattcatttcggcaacgtcatgatctcgaagcccaccctcaccgaaatt
tcaggcgagacaaccagcctcttgccctacgagtgccgcgaccgtaacctcacatactct
gcgcccatgtactgcaaggtttccaagcgcgcccgtgttgccatcaacgagcccgttcca
ctaaacgagctggacgatgagcagcacgagcttatgcgggagacgggcgagcacccgatg
acgattcgatgggaggaggaagagagcgacatgcctggagagggctccaagggggagaac
gataggggcgatctcattttcctcggcaagcttcccgtcatggtcaagtcgcaaatctgc
cacttgtacggcgaggacgacgagtcgctctttgtgctcaacgagtgcccttacgaccag
ggtggttactttatcatcaacggttccgagaaggtcttgatcgcccaggagcgatcggcg
gccaacattgtccaagtcttcaagaagccaccaggaggtagtgtctcgtaccaggctgag
atcaggagtgctcttgaaaagggctctcgtctgatttcgtcgctgcaaatgaagttgcac
accaaggcatccaacgagaagggcagattggccaataccgtgagcgttactctgccttac
gtccgtgaggacgtctccctcgccatcgtcttccgtgctcttggcattgtgtccgacgag
gatatcctgaaccacatttgctacgatcggaaggacacacagatgctcgaggctttgcgg
ccttgcatcgaggaggctttctgcatccaggaccgagaaatcgctctggactttatcggc
aagcgtggcaacgggaatatgggtcagaaccgcatgaaccgcatcagggccgcgaaggat
cttcttcagaaggagatgttgccccacatctcacagacagaaggttgtgaaacgaggaaa
gccttcttcttgggctacatggtcaacaagcttctccaatgcgcgctcggtcgcagggat
actgacgaccgtgatcactttggcaagaagaggttggatctggctggtccgcttttggcc
aagctcttccgtggcgttgttcgtcgcatgacacaggatctcatggggtacatgaagcgc
tgcctcgataccaacaagcatttcactctggccctcggcatcaaggccaacacattgaca
aacgctctcaagtactcgttggccaccgggaactggggtgatcagaagaaggccatgagc
tccacggctggtgtgtcacaggtgttgaaccgttatacctttgcctccacgctgtcccat
ttgagacgtaccaatacgcccatcgggcgtgacggcaagcttgccaaacccagacagctt
cacaacacccattggggtttggtctgcccagccgagacgcccgagggacaggcttgcggt
ctggtcaagaacttgtctctgatgtgctacgtgagtgtgggtactccggctgacccaatc
gtcgacttcatgacggcccgcggcatggatgtcttggaggagtacgagccgcttcgtgcg
cccaacgcgaccaaggtgtttgtgaacggcacatgggtgggtgtgcacaacgaccccaag
cagctcgtcacgttggtacaagatctgaggcggaagaatgtcatcagtttcgaagtgtcc
cttgttcgggacattcgcgagcgcgagttcaagatcttctctgatgccggccgtgtcatg
agaccgctcttcactgttgagcaagaggagaagggcaaccacggcgtagaaaaagggcaa
cttattctcaacaaggaccacattgccaggctccaaagggacaaggaacttggcaagtat
cacccggactactggggttggcaaggtctccttaagtcgggggccattgaatacctggac
gccgaggaggaagaaaccaccatgatctgcatgacccctcaggatctggatgatttccgc
atgaccaagctaggattccatatcgaaaccacctctggccaaggcaacaacaggatccgc
accaaggtcaacaagacgacacacatgtacacgcattgcgaaatccaccccgccatgctt
ctcggtatctgcgccagtatcattccgttccccgaccacaaccagtcgccccgtaacaca
taccagtctgccatgggtaagcaggccatgggcttcttccttaccaactattcccgccgc
atggacaccatggccaatattctgtactacccacaaaagccgttggctaccacgcggtcc
atggagttcctcaagttccgtgagttgcctgccggtcagaacgccattgtggccatcctc
tgttattctggctacaaccaggaagattccgtcgtcatgaaccagagcagcattgatcgc
ggcatcttccgcagtctgttcttccgttcctacacggactgcgagaagcgggtgggtatc
aacattgtggagatgtttgagaagccaacccgcggtgacacgttgaggttgaaacacggg
acgtacgacaaactggatgctgacggaatcattgctcctggcatccgtgtgtcgggcgaa
gacatcatcatcggaaagacgtcgcccatcaaccctgacaatgccgaactcgggcagcgg
cagcagcagcatgtcaagcgtgatgcgtcgacgcctcttcgcagcaccgagagtggtatt
gtggactcggtcgtgctcacgaccaaccaagacggcatgcgctacgtcaaggtcagggtg
cggacaaccaagattcctcagattggcgacaagtttgcgtctcgccacgggcaaaaaggt
accattggactcacctatcggatggaagacatgccctttacggccgaaggcatcacgcca
gacatcatcatcaacccccacgccattccgtcccgtatgaccattgcccatttggtcgag
tgtctgctctccaaggtggccacacttaagggcctggaaggcgacgccaccccctttacg
gacgtgacggtcgactcagtctctgacctgctccgcgagcaggggtaccagtctcgtggc
ttcgagatcctgtaccacggccacactggacgcaagctccgggcccagtgcttctttggt
cccacctactaccagcgtctcagacacatggtggacgacaagatccacgcgcgtgctcgt
ggaccggtccagatcatgacccgtcagccggttgagggtcgtgccagagacggcggtctc
cgtttcggagaaatggaacgtgattgtatgattgcccacggcgccgcatcgttcttgaag
gagcgtctgtttgaggtgtctgatgcgtaccgcgtgcacatttgcgagatttgcgggttg
atgacgcctatcgcgaacctcaccaagcaatccttcgaatgccggccttgcaagaacaag
accaagattgcgcaggtacacatgccgtacgcagccaagctgcttttccaggagctcatg
tcgatgggcattgcctcgcgcatgtttaccagcaggtcgggtatctcggtccgctag
DBGET
integrated database retrieval system
