Podospora pseudocomata: QC762_406240
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Entry
QC762_406240 CDS
T09797
Symbol
UFD4
Name
(RefSeq) Ubiquitin fusion degradation protein 4
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
QC762_406240 (UFD4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ppsd04121
]
QC762_406240 (UFD4)
Enzymes [BR:
ppsd01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
QC762_406240 (UFD4)
Ubiquitin system [BR:
ppsd04121
]
Ubiquitin ligases (E3)
HECT type E3
QC762_406240 (UFD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
HEAT
BUD22
Motif
Other DBs
NCBI-GeneID:
87909982
NCBI-ProteinID:
XP_062743901
LinkDB
All DBs
Position
4:complement(3069594..3076832)
Genome browser
AA seq
1750 aa
AA seq
DB search
MMLPLHPPGLLAGPSAVLPSRQIKTSLWVVPKNLIEVQPLHPHPPPPPPPEDKFPGDSDD
NEDNDEDDRLNRYDEDDDDDDMDPFGGFPGGGIPSSIHHTLRALTGMVSGISSRLREILN
NLRQKDDPTIQLIALQELSELLLVSNEDNLSGHFSPDQFVKELVTLMQPNELTGEENPEV
MLLACRCLANLMEALPGSAGNVVYGQAIPILCQKLLEIQFIDLAEQALSTLEKISVEYPH
HIVKEGGLNACLSYLDFFATGTQRVAVTTAANCCRGIHEENFPVVRDVMPILLNVLGSND
QRVVEQASLCVTRIVESFRRYAAKLEELVSPELLKAILRLLLPGTTNLIGSHIHTQFLRV
LAITAKVSPRLSAELFKMNVVETLYQILTGVSPPAGTEDIASKLDSVLIMQALIHRPREQ
IIETLNVICELLPSLPPSSDPSGHDYVDMHSPMDPITPSSPGSDKKTPNEKRIELLEGCK
DEVRRFAMILFPTLTDAYSSTVNLTVRQKVLTAQLKMLCNLDEDILVEALKPVSYASFLA
SILSQQDHPSLVMFALQATGILTSRLGSVYRYQLYREGVIAEIEKLATPEPEPEVESPTA
EPTEPQNEPESGAEAGSEELVVDQTVSDGENDEDRDDDEDRSHQDSDEDQEEDDEDDGDE
HDHDHDHHHDDSGSPVSSEGSTMSLDGPGRRLSVSDFPSSKTRIAQLAKKFLETHETEKQ
GKAMKKKATKILANLSELATELEAFYLHRTPGSLPVGDGTELFTRLASYFDSDVLESVTS
AELLASGVVRVLEEIFANPDEDLAAAAQSTFLQVFMGYTVKSKPKTATADSPATPLSVLV
HKLQDLLSRSEHFEVLTVHHNSYDGNRSSAASMLAKQIRLKLVADEDSDIPRNFRNIMVS
IHAITTFKSLDDYLRPRISMSDRPRQHRKDAVSRALAVMASSGLPMSAAAARLMERSFSP
STPPAPPAASSQPSGSRSGRKSKSKTQPSGDVPATPEPSSREKAALRRSARRQPASETAP
LPPPEDEDDLENALECADEKQLSDDDEDMEDESALDVVGDLEEDMGDSPTPDPSAVNVEV
AAGGKVMARKEDGTRVPTPSQSRQTSSLPSRASTLAAALQGTPTSSSSRPMSYAAAIQAV
PQDWHIEFSINGKVIPNETTIYRAVHSSATTSDEYLGRNVWSAVHPIKFRRVPGPPPAET
IAFGTSADTGAEVEEGSTPGSLAKSPTTASILRLLKKLHDLNANIDDVLVENKETLKVNV
EPLSQFVNTKLTAKLNRQLEEPLIVASNCLPSWSEDLARLYPFLFPFETRHLFLQSTSFG
YARSMSRWQNAQSQEEARRDRRDERPFLGRLQRQKVRIARPKILESAMKVMELYGASQSI
LEVEYFEEVGTGLGPTLEFYSTVSKEFCKKKLKLWRDHDPSDNGEFVSGPNGLFPRPVSE
DFLATEEGEKTLQLFKILGKFVARSMIDSRIIDINFNPIFFRIGNEHNAVRPSLGAIKSV
DPMVARSLMVIKKFAMAKKAIEEDPNRDAAQKVHDLENIAFDKIRLDDLYLDFTLPGYPD
IDLIPNGSQTRLTISNVDLYLERVIDMTLGSGVRRQVDAFRTGFSQVFPYSALSAFTPDE
LCSLFGRVEEDWSLETLMDSIKADHGYNMDSKSVRNLLQTMSQLTPTQRRDFLQFTTGSP
KLPIGGFKSLTPMFTVVCKPSEAPYTSDDYLPSVMTCVNYLKLPDYTTIDVLKKRLFTAI
KEGQGAFHLS
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgcccctccatccgccgggccttctcgccggtccaagcgcagtgctgccgagt
cgccagatcaagacgtcgttatgggtggtaccgaagaatctgatcgaggtgcagccgctc
cacccccaccccccgcctcccccgccacccgaagacaagttccccggagatagcgacgac
aacgaggataatgacgaggatgaccggctcaaccgatacgacgaagacgacgacgatgac
gatatggacccctttggtggcttcccaggtggtggaattccgagcagcattcaccataca
ctcagggcgttgactggtatggtttctggcatatcgtccagactgagagagattttgaac
aatcttcgccaaaaagacgatccaacgatccagctcattgcgcttcaagagctctcggag
ctcctcctggtgtccaacgaggataacctatcgggccatttttcacccgaccagtttgtg
aaagagttggtgacgttgatgcagcctaacgagttgacaggagaggaaaatcccgaagtc
atgctgttggcttgtcgctgcctggccaacttgatggaagcccttccgggcagtgccggt
aatgtggtgtatgggcaagctattcccatcctatgccagaaattgctggagatccagttt
atcgacctcgcggagcaggccttgagcactctggaaaagatctcggtcgagtatccccac
cacatcgtcaaggagggaggattgaatgcgtgtctctcgtaccttgacttcttcgccaca
ggcacccaacgggttgcggtgacaacagccgcgaactgctgccgtggcattcacgaagag
aactttcccgttgtgcgggatgtcatgcctatcctgctcaatgtattgggtagcaacgat
cagcgggttgttgagcaagcctccctctgcgtgacgcgaattgtggaaagcttcaggagg
tatgccgcaaagctggaggaattggtgagccccgagctgctcaaggccatccttcgtctg
ctgctccctggcaccaccaacttgatcggatctcacatccacacgcaattcctccgtgtt
cttgccatcacggcaaaggtgagcccaaggctgtcggctgagctcttcaagatgaatgtg
gttgagacgctctaccaaatcctgactggcgtttcgcccccggccgggaccgaggatatc
gcctccaagctcgacagtgttttgatcatgcaggctttgattcaccgaccccgagaacag
atcatcgagacgctcaatgtcatctgtgagcttttgccaagcttgcctccctccagcgat
ccgtccggtcacgattacgtcgacatgcactcgccaatggatcctatcacgccctcttca
cctggttctgacaagaaaacacccaacgagaaacggatcgagctgttggaagggtgcaaa
gacgaggtccggcgcttcgccatgattcttttccccaccctcacggatgcgtactcgagc
acggtgaacctgacggtgcgtcaaaaggtgttgactgcccagctgaagatgctttgcaac
ctggacgaagacattctggtggaagccctgaagcccgtttcgtacgcctccttcctggca
tctatcctctcgcagcaagaccacccctctttggtcatgtttgctctgcaggccactgga
atcttgacaagccgtttgggttcggtctatcggtaccagctgtatcgcgagggagttatt
gccgagatcgaaaaattggcaacgcccgaaccggaacccgaggtcgaatctcctacggca
gagcctaccgagccgcagaacgaaccagaatcgggagcagaggccggtagtgaggagctt
gtcgtggaccaaaccgtatctgatggcgaaaatgacgaggaccgcgatgacgacgaggac
cgttcgcaccaagattcggatgaggatcaggaggaagacgacgaagacgatggtgacgag
cacgatcatgaccatgaccaccatcatgacgattcaggatctccagttagttctgagggt
tccaccatgtccctcgatgggcccggccgccgtctgtcggtctcagattttccctcttca
aagaccaggattgcacagttggccaagaaattcctcgagactcatgagaccgagaagcag
ggtaaggctatgaagaagaaggcgactaagattcttgccaacctctcagagctggccacg
gagctcgaggccttttacttgcaccggacacctggaagcttgcccgttggtgacggtaca
gagctgtttacaagactggcctcctattttgactcggatgtgttggagagtgtgaccagc
gccgagcttctggcctctggcgtagtccgggtgctcgaggagatttttgccaatcccgat
gaggatcttgcagctgcggcgcagtcgacgttcctccaggtctttatgggatacactgtg
aagtcgaaacccaagactgcgactgcagactcccctgcgacacccctcagcgtcctggtt
cacaagcttcaggatcttttgagcagatcagagcactttgaggttcttacagttcatcac
aactcatacgatggcaaccgcagcagtgcggcgtccatgctcgcgaagcaaattcgcctc
aagctggtcgctgatgaggattcggatatccctcggaactttcgcaacattatggtttcg
atccatgccatcacgaccttcaagtctctggatgactatctgcggccgcggatcagcatg
tctgaccgtcctcgtcaacatcgtaaggatgcggtttcgcgtgctctcgcggtcatggct
agctcaggcttgcccatgagcgctgccgccgcccgcttgatggagcggtcattctctcct
tcgactcctcccgcccctccggctgcttcctcgcagccttccggttcgcggtcaggcaga
aagtccaagtccaagacgcagccctctggagacgttccagccacaccggagccatcgtcg
agggaaaaggctgctctccgtaggtcggcacgccgccaaccagctagtgaaactgctcct
ctcccgccaccagaggatgaggacgatctcgaaaatgcccttgagtgcgcagatgagaag
caattgtctgatgacgatgaggacatggaagatgagagcgccttggatgttgtgggtgat
ctagaagaagacatgggtgactcccccacccccgacccttccgctgtcaatgtcgaagtc
gccgcaggcggcaaggtcatggctcgcaaggaggacgggactagggttcccaccccttct
caaagccggcagacatcttcgcttcccagcagagccagcacgctcgccgccgctctccag
ggcacacccacttcctcatcctcgaggcccatgtcatacgccgccgccattcaagctgtg
ccccaagactggcacatcgagttcagcatcaacggcaaggtgattcccaacgagacaact
atttaccgcgcggttcacagctctgccactacgtctgatgaatacctcggccgaaatgtt
tggtctgctgtgcatcccatcaagttccggcgcgtccctggcccccctcctgccgagacc
atcgcatttggaacatcagccgacacgggggcggaggtcgaggagggtagcactcccgga
tctcttgctaagtcgcccaccacggcatcgatcctgcgcctgctgaagaagctccatgac
ctcaatgccaacattgatgacgttctggtcgagaacaaggagacactcaaggtcaatgtc
gagccgctctcccagtttgtcaacaccaagcttacagccaagctcaaccggcaactggaa
gaacccctcattgttgcgagcaactgcctcccaagctggagcgaggacctggcgaggctc
tatcccttccttttccccttcgagacccggcatctcttcctgcagagtacttcgtttggc
tatgccaggtctatgagtcgatggcagaacgcccagtctcaggaggaagcccggagagat
cgccgtgatgaaaggccgttcctgggaagactgcaacgtcaaaaggtacgcatcgctcgg
cccaagattctcgagtcggccatgaaggtgatggagctctacggggcgtcacaaagcatt
ctggaggttgagtactttgaagaggtcggcactggccttggacccacgctggagttctat
tcgacggtatcgaaagagttctgcaagaagaagctcaagctctggcgcgaccatgatccc
agcgacaatggagagtttgtctctgggcctaatggacttttccctcgacccgtgagcgag
gatttccttgcaactgaggaaggcgagaagaccctccagctcttcaagatccttggcaag
tttgtggcacggtccatgatcgactctcgcatcattgatatcaacttcaaccccatcttt
ttccgcatcggcaatgagcacaatgccgtccgcccctctctgggggctatcaagtctgtc
gaccctatggttgcgcggtcgttgatggtgattaagaagtttgccatggccaagaaggcc
attgaggaggatcccaaccgcgacgctgcgcaaaaggttcacgacttggagaatatcgcg
tttgacaagatcaggctcgacgacctctacctcgactttaccctgcctgggtacccagac
attgatctaattcccaacgggtctcagactaggctgacgatatccaacgtggacctctac
ctcgagagggttattgacatgactttgggaagcggtgttcgccgccaggtcgatgccttc
cggaccggcttctcacaggtcttcccgtactcggccctgagcgcttttactccggacgag
ctgtgctccctgttcggtcgtgtggaggaggattggtcccttgagacacttatggattcg
atcaaggccgatcacgggtacaacatggacagcaagagcgttaggaacttgctgcagacg
atgtctcagttgacgccgacgcagcgtcgtgactttctgcagtttaccactggcagtccc
aagctccccattggcggtttcaagagcctgacccccatgttcacggtggtgtgcaagcca
agcgaagcaccatatacatcggatgactacttgcctagcgtcatgacttgcgtcaactac
ctgaagctccccgactacacaactatcgatgtcttgaaaaagagactgtttactgccatc
aaggagggacagggggcattccatttatcgtaa
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integrated database retrieval system
