Podospora pseudocomata: QC762_503880
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Entry
QC762_503880 CDS
T09797
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
QC762_503880 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsd03400
]
QC762_503880 (MSH6)
DNA repair and recombination proteins [BR:
ppsd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
QC762_503880 (MSH6)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
AAA_21
AAA_23
AAA_27
ABC_tran
AAA_29
Motif
Other DBs
NCBI-GeneID:
87910711
NCBI-ProteinID:
XP_062741928
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All DBs
Position
5:1583697..1587511
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AA seq
1215 aa
AA seq
DB search
MGDKTAARTPAKTPSTAKKQGQAPSTGKQQSILGFFSKTPASSANAPNSSPSVKPTPTLK
KASSSQCLQETTKSNSARRPPDATPVPSSDAPEPTSSQENRDVSTAKVSKSRTTMRDTTT
LPSSPSRKVKKTVNYAESSDEEDEEFIASLTSRKSRQRRPREAVIDEDDEDTYEAGANEV
EEEDDEMEDFVVSDDSDAPSRSKKRKRPAAKTSAPRKKTTNPSPPRSAAPDLDGDEPMED
VPPSTSTAQKWKYDPDSIDHDEPQETVVKAPPAAKKPSSTPKPKPKAHTQEPEKRYPWLA
NILDGNKKPPTDPEFDPTSIYIPPAAEKQFSAFEKQYWDIKKNLWDTVVFFKKGKFYELY
ENDATIGHQLFDLKMTDRVNMRMVGVPESSLDMWVNQFVAKGFKVARVDQMESALGKEMR
ERDAKAKKADKIIRRELACILTAGTLVDGSMLQDDMATYCAAIKESVVDGKPCFGIAFVD
AATGQFLISEFEDDVDLTKFETFVAQTCPRELVLEKSRLSTKALRILKNNTAPTTIWNYL
KPGTEFWDAETSRRELECNGYFSNADNQEEVWPEKLEKVKEKDLLMSALGGLVHYLRFLK
LERSLLSQGNFESYNPIHRNGTLILDGQTLINLEIFSNTANGGVEGTLFNLLNRCITPFG
KRLFRQWVCHPLCNIQKINERLDAVDMLSNDKSALAEFSSHMSKMPDLERLISRIHAGSC
RPEDFVRVLEGFEQIDYTMNFLGAFGGGNGLVDRLISCMPDLKEPLGYWETAFDRKKARD
SKVLIPERGIEEDYDNSEDELNRIKEELAQLLEKQKTALKCRQLKFTDVGKEVYQIEVPK
SVKVPSSWRQMSATAAVKRYYFRELESLVRELQETEETHSQIVKEVASRFFKKFDVDYEV
WLQAIRIISQLDCLMSLAKSSLALGLPSCRPEFVDDERSVLHFEELRHPCMINRVDDFIP
NDIHLGGEQAKINLLTGANAAGKSTVLRMTCTAVIMAQIGCYVPAVSAKLTPVDRIMSRL
GANDNIFAAQSTFFVELSETKKILAEATSRSLVILDELGRGTSSYDGVAVAQAVLHHVAS
HIGCVGFFATHYHSLATEFENHPEIRARRMQIHVDGGNRRVTFLYKLEDGVAEGSFGMHC
AAMCGIPNKVIEEAEVAAKEWEHTSRLKESLERAKTGCYIPLGVLSDVASLLRVGGEAEV
QERGVEVLLRAIEAL
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgggagacaagacagcagcccgcaccccggcaaagacgccgtctacagctaagaaacag
ggacaggcgccgtcaacgggcaagcagcagagcattctcggcttcttttctaagacacca
gcaagcagtgccaatgctcccaattcttcgccctcggtcaagccgacacctaccctcaag
aaagccagctcctcgcaatgcctccaggagacaaccaagtccaactctgcgcgacgacca
cccgatgctacacctgtccccagcagtgacgcccctgagccgaccagctctcaggaaaac
agagacgtcagcactgccaaggtgtcgaaatcgaggacgaccatgagggacaccacgacg
ctgcctagcagcccttcccgaaaggtcaaaaaaaccgtcaactatgccgaatcatccgac
gaagaagacgaggagttcatcgcctcattgacatctcgaaagagccgacagcgccgcccg
cgtgaggcggtcatcgacgaggatgatgaggacacgtacgaggcaggcgccaatgaagtt
gaagaggaggacgacgaaatggaagactttgtagtctcggacgactcagatgctccatcc
agatcgaagaagaggaaacggccggctgccaaaacctctgcgccacggaagaagaccacc
aacccatcgccgcctcgttcagctgctccagacctggacggtgacgagccaatggaagac
gtccccccgtcgacgtccaccgcacagaagtggaaatacgaccctgacagcatcgatcat
gacgagccacaggagacggtcgtcaaggcccctccagctgcgaagaagccgtcgtcaaca
cccaaaccgaaaccgaaagcccacactcaggaacccgagaagagatatccctggctggcc
aacatcctggatggcaacaaaaagccaccaaccgacccagagttcgatcccacgtccatc
tacatcccaccggcagcggagaagcagttctctgcctttgagaagcagtactgggacatc
aagaagaatctctgggataccgtcgtgttcttcaagaaaggcaagttctacgagctgtac
gaaaatgatgcaaccattggtcaccagttgtttgatctgaagatgacagaccgcgtcaac
atgcgtatggtgggtgtccctgagagctcactcgatatgtgggtcaaccagttcgtcgcg
aaaggcttcaaggtcgctcgtgtggaccagatggagtccgcgcttggcaaagagatgcgt
gagcgtgacgcaaaggccaagaaggcggacaagatcatccgacgtgagcttgcttgcatc
ttgactgccggcaccctggtggacggcagcatgctccaggatgatatggccacatactgc
gcagccatcaaggagtctgttgtggatggcaagccttgctttggcattgcgtttgtggat
gccgccactggtcagtttttaatttccgagtttgaggatgatgtcgacctcaccaagttc
gagacctttgttgcccagacatgccctcgggaactggtgctggaaaagtcgcggctgtcc
accaaggcgctccgcatcctcaagaacaacactgcacctaccaccatctggaactatctc
aaacccggcaccgagttttgggatgctgagacgtcgaggcgggaactggagtgcaacggt
tacttctccaacgctgacaaccaggaggaagtctggccggagaagctcgagaaggtcaag
gagaaggacctcttgatgtcggctcttggcgggctggttcattacctgcgcttcctcaag
ctcgaacggagtttgctctcgcaagggaactttgaatcatacaatccaatccaccgcaac
ggcacgctcatcttggacggccagaccctcatcaacctcgagatcttctccaacacggcc
aacggtggcgtggaaggaacgctttttaacctcctcaacaggtgtattacgccgtttggg
aagcgtctcttccggcagtgggtctgccacccgctctgcaacatccagaagatcaacgaa
cgtcttgatgcggtggacatgctcagcaacgacaagagtgcgcttgccgagttctcgtcc
cacatgagtaagatgcccgacctggagcgattgatctcgcgcatccacgccggctcctgc
agacctgaagactttgtccgtgttctcgagggctttgagcagattgactacaccatgaac
ttccttggcgcttttgggggtggcaatgggctggtggaccggctcatttcttgcatgccc
gatctcaaagagccccttggttactgggagacggcctttgacaggaagaaggctcgcgac
agcaaggttctcatccccgagcgggggatcgaggaggattatgacaacagtgaggacgag
ctgaaccgcatcaaggaagagttggctcagctgctcgagaagcaaaagacggccttgaag
tgcaggcaactcaagttcaccgacgtcggcaaggaggtgtaccagattgaagtgcccaag
tcggtcaaggtgccttcgagttggcgccagatgtcggctacggccgctgtcaagcggtac
tacttccgagagctggaaagccttgtccgtgagctccaggaaaccgaggaaacgcactcc
cagatcgtcaaggaggtcgcgtcaaggttctttaagaaattcgacgttgattacgaggtg
tggttgcaggccattcgcatcatctcgcagctggactgcctgatgagcttggccaagtcg
tctcttgccctcggccttcccagttgccgtccggagtttgttgatgacgagcggagcgtc
ttgcactttgaggagctccgtcacccgtgcatgatcaacagggtggacgactttattccc
aacgatatccacctcggcggcgagcaggccaagattaaccttcttaccggtgccaacgcg
gctggaaagtcgactgttcttcgaatgacttgtactgccgtcatcatggcccagattggc
tgttacgtcccggctgtgtcggccaagttgacgcctgtcgaccgtatcatgtctcgtctc
ggcgccaacgacaatatttttgccgcccaaagcaccttctttgttgagctgtccgaaacc
aagaagattctggccgaggctacgtcccgctcccttgttattcttgacgagctcggacgt
ggcacctcttcgtatgatggcgtggctgtcgcccaagctgttcttcaccatgtagcatcc
cacattggttgtgttggcttctttgctacccactaccacagcctggcaaccgagtttgag
aaccaccctgagatccgggcgcggaggatgcagattcacgtcgacggtgggaaccggcga
gtgacgttcttgtacaaactggaggacggtgttgcagagggatcgtttggtatgcactgt
gctgccatgtgcggtattcctaacaaggtcatcgaggaggccgaggtggcggccaaggag
tgggagcacaccagccggttgaaggaaagcttggagagggccaagacggggtgttacatc
cctctcggagtgctgagcgatgtggcaagcttgctcagggttggtggtgaggcagaagta
caggagcggggggtggaggtgctgttgcgagccattgaggcgctctga
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