Podospora pseudocomata: QC762_509410
Help
Entry
QC762_509410 CDS
T09797
Symbol
msh2
Name
(RefSeq) MSH2 protein
KO
K08735
DNA mismatch repair protein MSH2
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
QC762_509410 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsd03400
]
QC762_509410 (msh2)
DNA repair and recombination proteins [BR:
ppsd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
QC762_509410 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
P53_C
AAA_27
Motif
Other DBs
NCBI-GeneID:
87911258
NCBI-ProteinID:
XP_062742686
LinkDB
All DBs
Position
5:3857976..3864558
Genome browser
AA seq
919 aa
AA seq
DB search
MSSRPELKVDDEHGFIRYYKSLPKVDEDVIRIFDRGDWYTAHGEDANFIARTVYKTTSVV
RQLGKNDHTGLPSVTMTVTVFRQFLREALYKLGKRIEIYASPNGRMNWKIVKQASPGNLQ
DVEDELGGQFEGAPVILAVKITAKASEGRTVGVCFADASVRELGVSEFLDNDLYSNFESL
VIQLGVKECLMQIDKAEKNKDPELAKLRQILDSCGISVSERPAGEFSTKDIEQDLARLLK
DERSATLLPQTDLKLAMGSAAALIKYLGVLHDPSNFGQYQLYQHDLAQFMKLDAAALKAL
NLMPGARDGAKTMSLYGLLNHCKTPVGSRLLSQWLKQPLMDKAEIEKRQQLVEVFVNDTE
LRQTMQEEHLRSIPDLYRLSKRFQRKKATLEDVVRAYQVVIRLPGFLGTLEGVMDEAARD
PLDEAYTNKLRELSNSLVKLQEMVETTVDLDALENHEFIIKPDFDDGLRIIRKRLDKLRS
DMDKEFSEAANDLDQERDKKIFLENHKVHGWCMRLTRTEASCIRNKSRYQECSTQKNGVY
FTTKTLQAYRREFDQLSQNYNRTQSGLVNEVVGVAASYCPVLEKLGGVLAHLDVIVSLAH
CAENAPISYARPKIHPRGQGQTILTEARHPCMEMQDDVTFITNDVSLTRDNSSFLIITGP
NMGGKSTYIRQIGVIALMAQIGSFVPCESAELTIFDSILARVGASDSQLKGVSTFMAEML
ETANILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIIQQIGCFALFATHFHELTAL
AEKYPQVQNLHVTAHITSDRDVKREVTLLYKLAPGICDQSFGIHVAELVRFPDKVVRMAK
RKADELEDFTSKHEAGSVKYGKGDVEEGSALLKDVLVKWKDQVKGGGMTKQEMVERLREL
VRSDERLEGNPFFQSVKAL
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccagaccagagctcaaggtcgatgatgagcacggcttcatccgatactacaag
tcccttcccaaggtcgacgaggacgtgattcgcatattcgatcgaggtgactggtacact
gcacacggagaagatgccaatttcatcgcgcgcactgtctacaagaccacctcggttgtc
agacaactgggcaaaaatgaccacaccggcctgccatcagtcaccatgactgtcaccgtc
ttcaggcagttccttcgggaagcgttatacaagctgggaaagagaattgagatttatgcc
agccccaacggccgcatgaactggaagattgtgaagcaagcctcgccaggcaacctgcaa
gatgtcgaggacgaacttggagggcagttcgagggagcgccagtgatcttggccgtcaaa
atcacagccaaggcatcagaaggcaggacggttggcgtgtgctttgccgatgccagcgta
agagagctcggtgtcagcgagtttctcgacaacgatctgtactccaactttgagtctctg
gtcattcaactcggcgtcaaggagtgcctcatgcagattgacaaggcagagaaaaacaag
gatccagagctggcaaagctgagacaaatcctcgacagctgtggcatttccgtttcggag
agaccagcaggcgagtttagcaccaaggacattgaacaagatctggcaaggctgctgaag
gacgagcggtctgccacgttactcccacagaccgacttgaaacttgctatgggctcagca
gctgctctgatcaagtatcttggtgttttacacgacccttccaactttggacaatatcag
ctctaccagcacgaccttgcccagttcatgaagcttgatgccgccgcgctcaaagccctc
aacctcatgcccggtgccagggatggtgccaagaccatgagtctgtatggtctcttgaac
cactgcaagactcccgttggtagcaggctgttgtctcaatggttgaagcagcccctgatg
gacaaggctgagattgagaagcgtcagcagcttgtcgaggtgtttgtcaacgacactgag
cttcgacagactatgcaggaggagcacctcaggtctatccctgacttgtacaggctatcc
aagcgctttcagcggaagaaggcaaccctcgaagatgtcgtcagagcttaccaggtcgtc
atccgcctgcccggcttcctaggcacactcgagggagtgatggacgaagctgcccgtgac
cccctcgatgaggcttacaccaacaaactccgcgagctctccaacagtctagtcaaactc
caagaaatggtcgaaaccaccgtcgacctcgacgccctcgaaaaccacgagttcatcatc
aaacccgacttcgacgacggcctccgcatcatccgcaagcgcctcgacaagctccgctca
gacatggacaaggaattctccgaagcagccaacgacctcgaccaagagcgtgacaagaag
atctttctcgagaaccacaaagtccacggctggtgcatgcgcctgacccggacagaagca
agctgcatccgcaacaagtcccgctatcaggaatgctcaacccagaagaatggagtctac
ttcaccaccaaaaccctccaagcctaccgccgggaattcgaccagctctcccaaaactac
aacagaacccaatccggtctcgtcaacgaagttgtcggcgtagcagcctcgtactgcccc
gttctcgaaaagctaggcggcgtcctcgcccatctggacgtgatcgtctccctcgcccac
tgcgcagagaacgcccccatctcctacgctcgtcccaaaatccacccacgaggtcaagga
caaacaatcctcaccgaagcccgccacccctgcatggaaatgcaagacgacgtcaccttc
atcaccaacgacgtctccctcacccgcgacaattcttccttcctgatcatcacaggccca
aacatgggcggcaagtcaacctacatccgccagataggcgtcatagccctcatggcacaa
atcggctccttcgtcccctgcgagtcggccgagctgaccatctttgactcgatcctcgcc
cgcgtgggggcaagcgactcgcaactaaagggggtatcaacctttatggccgaaatgctc
gaaacagccaacattctcaagtcagccacctccgaatccctgattatcatcgacgagcta
ggccgcggaacgtcgacctacgacgggttcggtctcgcgtgggcgatttcggagcacata
atccaacagatcgggtgttttgccctgtttgcgactcattttcatgagctgactgccctc
gcggaaaagtacccgcaggttcagaacctgcatgttacggcgcatattacgagcgacagg
gatgtgaagagggaggtgacgctgctgtataaactcgctccggggatctgcgaccagagc
tttgggattcatgtcgccgagctggtgaggtttccggacaaggttgtcaggatggcgaag
cggaaggcggacgagctggaggattttacgagtaagcacgaggcggggagtgtcaagtat
ggaaagggggatgtggaggaggggagcgcgttgttgaaggatgtgctggtgaagtggaag
gatcaggtcaaggggggggggatgacgaagcaagaaatggtggagaggttgagggagctg
gtcaggagcgatgagaggttggaggggaatccgttttttcagagtgtgaaggctttgtag
DBGET
integrated database retrieval system
