Podospora pseudocomata: QC762_512070
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Entry
QC762_512070 CDS
T09797
Symbol
VPS13
Name
(RefSeq) Vacuolar protein sorting-associated protein 13
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
ppsd
Podospora pseudocomata
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppsd04131
]
QC762_512070 (VPS13)
Membrane trafficking [BR:
ppsd04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
QC762_512070 (VPS13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_VAB
VPS13_M
VPS13_C
Motif
Other DBs
NCBI-GeneID:
87911515
NCBI-ProteinID:
XP_062742270
LinkDB
All DBs
Position
5:complement(2569542..2580164)
Genome browser
AA seq
3212 aa
AA seq
DB search
MLEGLVAGLLNRFLGMYVKNFDPTQLKVGIWSGDVKLRNLELRREALDQLKLPINVIEGH
LGELTLVIPWSNLRGAPVKIFIEDVFLLASPKEEAEYNEEEEERRKQRIKMEKLDSAELL
KERSQEGLSQEEQKRTQSFTESLVTKIVDNLQITVKNIHVRYEDAISAPGHPFALGITLE
EFSAISTDGQWTPTFIQDSNHTTHKLATLESLAVYWNTDTKLMGPGRELSTPDTEVTPHD
EMLANFRSMIVSGENDQSGTHQFILKPVSGQAKIELDKTGSRQVPKFKGNLLFDEIGLVL
DDQQYRDALMMVDLFHYFIRHQEYKKYQPKGVRPKEDPRAWLQFAGNAVLSKIHERNRRW
SWDYFKERRDDRRRYIELFKKKKQSQQLSAQENDDLNRLEWKLDYEDLRFWRSLARNQLK
RENAEALRNRPPAQPQQQQGWLAWAWGSKPQHQEKQDDSENIQITEEQRKELYEVIDWDE
KTALAAEVDVPRDTVKMQLEASLSMGSFTLKQSPHGDTRDLISLHFDVFKAKGIKRPDSF
LADLSLGGLRVNDGTTPNSVYKEIVRVKDAPESDPDKRLSIAELEKNGNEAFFQFQVEQN
PLDGQGDVAVTAKLKPLEIVWNPNVVVGVADFFRPPDRHMESINALMETAGATVEGLREQ
TRAGLEFALEEHKTVNAKLDLQAPLIIIPESITNKKSTCLILDAGHISLTSELVDRDTMK
EVQSKQNQSYTDEDFKRLESLMYDRFLVKLTSTQVLIGPSIKETKQQLVEKDERQKLHIV
DKINVNFVVETSIIPKAPNLTKLRVSGHLPVLHVSASDAKYKTLMRIIEVAIPKFDGDQT
QTSLETRPKRPRLASNASSRSQRWADRAPSTQLLQFPSAQQAIILNDDDLDDDNDKFEDA
KDTSAKDQLKLQQRIFEFKFTVDQLKGSLYRSDPDKKRPDQLLVELVAEHFGVEYYLRPY
DMAAEVALGSVTVDDFVDNPSAEFKSIVSSGDVEDRQQARNLVHVKFVRVKKESPEFMSV
YEGIETNVDVAVSTINLVVTRKTLLTLLDFILVTFTNNNASNNASTQKAITDDDSEVDVE
VVPPEEELQQEAGAIRVKVDLKSIRMILNNDGIRLATLSFNHADVGVFLLGRTMRVNTKL
GDLTLVDDVNQGVSEDSSLRQLVTIQGKELANFRYETFDPLKPELYPGYDSSIFLRAGSV
KVNFLEEPFRKIVDFLVKFGKMQAIYNAARQAAANQANQLQQTSSRIKFDVVINTPIVVF
PRVVMPERPKRDVITAYLGEIYAQNKFAPLDDSENADIAMKLSAGIRNIRLTSNFHYTGD
RSEELELIDHVDLEFKVTYAEHKEGVKRPDFDIEGTMTDFNLRITPYQLNSLLELSRSVP
AAFAGGAEQSDEEAERDVDDATLERARTMTGFNSESSNEKLIDMGPELGTHGQAWTKLDL
VFTVNTIGLELIRAPEDAPVGDMDAASLSKFSLDSSVIKTRMDSNGSLEAELVIQAFTIF
DTRHRETNKFRRIMTSNNKDVQQFMASITMSGGEERNVIAMIAIDSPRVIFALDYLFALQ
KFITVGTQVVEPPAIPDKSPIESPEEMSDADSMQVSLGRPSQSSSRGISPSKPAEASKAP
EPKKLTFAYRVNVVDAQVILIANPLSASSEALVLGTKQVLLSQQHAFTFQISQCGMFLCR
MDRFDDSRLRIIDDFSVQMSMDSSQPQTTKIHVDVEPLILRVSLRDILLVMQTITKASEL
SGGTPANSNTAKASDQKAKQLKAPPGLKQRSASGKGGSTLAARTRASKKSVGGVSTSGRS
TKSGQLVPHDIVKVPPRHEELTATIDGVRLVLIGDLHELPILDMSIKKFTSTAANWSSNL
KAEASIEMYTNIYNFAKSAWEPLIEPWQVGLGVARDQASGVTSVDVASNRTFDVTVTTAS
IALLSKSFAFFSQDQDVLSKPRGAEAPYRIRNYTGFNVAVHAKRQSSEEPTSLRLEDGQE
APWSFEDWEKMRENVLAENGVSSVGVQLEGSGFDMVKNIRLTREGEFLYALKPKADQVLH
KLLVHVELGTDNVKYVTLRSPLLVENETDIPVEIGVYDAHEGHLLKIEKIAPGESRPAPV
GAVYLKSLLVRPDPGFGYGWSNDTLWWRDLLKRPTKTMVCKGDHAEPFYFQMSARFDKAN
PMTRNYPYMRLKLSAPVTLENLLPYDFKYRIYDKNTKKDWSNFLRKGGVSPVHVVELSHL
LLLSVDMQDTVFKPSEFAIINAGATDDFKKETHLVCKDDAGMALNLRLHYYRIPDSGGAF
KVTVYSPYVVLNKTGMDVSVRSKGFMQQAKAAAGQALIDIGDGSHRKTKPMMFSFNSDDH
RNRALLKVGDSEWSKPQSFDAIGSTSEVVLNSPTRNAEIHLGVTVESGQGKYKMIKTVTL
APRYVIQNKLGEDINIREPSSSGLISLKSGAFRPLHFLNRGHVKQLCMCHPGVDNQWTAP
FNISDLGTTHIKIAKAGQRQRLVRVDILMEDATIFLNLSMEQKAWPFSMRNESDTEFTFY
QVNPNIDEDGTEDRSGWRPVRYRLPPRSIMPYAWDFPAAKHKEVCISAYNKERYVKLAEI
GNLMPMKFIGTNGQSKIIDINVTADGPTQTLILSNFKQSKSLYRQKSNAGSTTSREGFEA
KELDTGTTFRAQLRLSGIGVSLINSQMKELAYITFRDVALRYSDSPLYQTISLAVKWIQI
DNQLYGGIFPMILYPSVVPKRAQEVDAHPSLHAMVTRVKDDSYGVEYIKYATILLQEMTV
ELDEDFIYAVLEYSKIPGASWSDTVEEDKLCDDNIDIPQPKQQQSGKDIYFEVLNIQPMQ
LDLSFVRTERVNAEDKTSSRNPVMFFFNVMTMAIGNINDAPIRFNALMLENVRVSIPILI
QNISNHYSQEALYQVHKILGSADFLGNPVGLFNNISSGFADIFYEPYQGLIMSDKPEDFG
LGVARGAGSFFKKSVFGVSDSLSKVTGSFAKGLAAATMDKQFQDRRRITRARNRPKHAIY
GVTAGANSLFTSVASGVGGLARKPLEGAEQEGALGFFKGIGKGVVGLATKPAIGVLDFAS
NISEGVRNTTTVFDGSELDRVRLPRYIPADGIVRPYSQREALGQSWLKQVDNGKYFDEQY
IAHLELPTEDMVVMVTYSRILLIRSRRLQTEWDVPLKDIQTIAKERTGLSLTLRGGTNGP
FIPIGEESGRTFIYRMVAVAVEEFNRRFRGLE
NT seq
9639 nt
NT seq
+upstream
nt +downstream
nt
atgttggaaggcctggtagctggcctgctcaaccgcttcttgggcatgtatgtcaagaac
tttgacccaacacagctcaaggtcggcatctggtccggagatgtcaagctacgcaatctc
gaactgcgccgtgaggccctcgaccagctcaaacttccaataaacgttattgaggggcat
ctgggagagctcacattagtaatcccctggtccaatctacggggtgcgccagtcaagatc
ttcatcgaagatgtgtttcttctcgcgtccccaaaggaggaggccgaatacaatgaagag
gaggaggagaggcggaagcagaggataaaaatggagaagttggactcggccgagttgctc
aaggagagatctcaggaagggctcagccaagaagagcagaagcgcacccagagcttcacc
gaaagtctggtcaccaagattgttgacaacctgcagataacagtcaagaacatccacgtt
cgctacgaggatgccatctcggccccgggtcaccccttcgccctgggtatcaccctcgaa
gagttcagcgctatcagcacagacgggcaatggacacccaccttcatccaggactcgaac
catacgacacacaagctcgcgacgttggagtcattagcggtatactggaatacagacaca
aagcttatgggtcctgggagggagttatcgacgcctgataccgaggtgacgccacatgac
gagatgctcgccaacttcaggtccatgattgtgagcggggagaacgaccaatctggcacg
catcagttcattctgaagcctgtttccggccaggccaagatcgagctcgacaagaccgga
agtcgacaggtgcccaagttcaagggcaacctgctgtttgatgaaatcggtcttgtgttg
gatgaccagcaataccgtgatgcgctgatgatggtggacctcttccattactttattcga
catcaagagtacaagaaataccagcccaagggagtcagaccaaaagaggatccgcgcgca
tggctccagtttgccggcaatgctgtgctgagcaagatccacgagcgcaacaggcgttgg
tcctgggactacttcaaagagcgcagggatgacaggaggcgatacattgagttgttcaaa
aagaagaagcagagccaacagttgtcagcccaggagaatgacgacctaaacaggctggag
tggaagctcgattatgaggatctccggttctggcgctcgctcgcccgtaaccagcttaag
agggagaatgcggaagccctcaggaaccgtccacccgcgcaaccacagcaacaacagggc
tggctagcctgggcgtggggttccaagccgcaacatcaagagaagcaggatgactctgag
aacatccagatcaccgaggaacaacgcaaggagctttacgaggtcatcgactgggatgag
aagacggcacttgccgccgaggtcgacgtaccgagggacactgtcaagatgcaactcgag
gcatctcttagcatgggaagtttcacgctcaagcaaagtcctcatggtgacacccgagat
ctaattagtcttcactttgatgtgttcaaggcgaagggtattaagcgtcctgactcgttc
ctggctgacctcagtcttggtggcctgcgcgtcaacgatggcaccactcccaacagtgtc
tacaaggaaattgtccgcgtcaaggatgccccggagagcgatcccgacaaacgcctgtcc
atcgctgagctggagaagaacggtaacgaggcattcttccagttccaggtcgagcagaac
cctctggatggacaaggtgatgtggctgtgactgccaagctcaagcctctggaaattgtg
tggaatcccaatgtcgtcgtaggtgtggccgacttcttcaggccaccagaccggcacatg
gagtccatcaacgcgctcatggagacagctggtgctacggtggagggccttcgagagcag
acgagagcaggtctggagtttgccttggaggaacacaagactgtcaatgccaagctcgac
ttgcaagcgccccttatcatcatccccgagagcatcaccaacaagaagtcgacatgcctg
attctggatgccggtcacatcagcctgaccagcgagctagtggacagggatacgatgaag
gaggtccagtccaagcagaaccagagctacacagacgaggactttaagcgtctggaatct
ctcatgtatgatcggttcttagtcaagctcacatccactcaggtcttgattggaccctct
attaaggagacgaaacaacagctggtagagaaggacgaacgtcaaaagcttcacattgtt
gacaagatcaacgtcaattttgttgtcgagacgtccatcatccccaaggctccgaacctc
acgaagctcagagtgtctggtcatctccccgtgctacatgtcagcgcatcggatgccaag
tacaagactctcatgcgaatcatcgaagtcgcgatacccaagtttgatggcgaccagaca
caaacgtcactggaaacccgccccaagcgaccccgtctcgccagcaatgcctcgtcacgg
tcacagcggtgggcggaccgtgcgccgtctactcagcttctccagttcccctccgctcag
caagccatcatcttgaacgacgacgacttggatgatgataacgacaagttcgaagacgcc
aaagacacctctgctaaggaccagttgaagctccagcaacggatattcgagttcaagttc
acagttgaccagctcaaggggtcactttaccgcagcgatcctgacaagaaacgcccagat
cagcttcttgtggaactcgtggccgaacactttggtgttgagtactaccttcggccctat
gacatggcagctgaagtggcactgggttcagtgaccgtcgacgactttgtggataaccct
tccgccgagttcaaatccatcgtgtcgtctggtgatgtagaagatcgccagcaagcgaga
aacctggttcatgtcaagtttgttagggtcaagaaggagtcgccagagttcatgagcgtc
tacgaaggcatcgagaccaacgttgatgtcgccgtctccaccatcaatctcgtcgtcacg
cgcaagactcttctcacgctgctcgacttcatcctcgtcaccttcaccaataacaatgca
agcaacaacgccagtacacaaaaggctattaccgacgatgactcggaagttgatgtggaa
gtggtccccccagaggaagagctccagcaggaggccggggcaatccgggtcaaggttgat
ctcaagagtattcgcatgatcctgaataatgatgggatccggctggccactctgtcgttc
aaccatgccgatgttggagtcttccttcttggcagaaccatgcgggtcaacaccaagctc
ggcgacctgactctggtggacgatgtcaaccagggtgtttcagaagactctagtcttcgt
caactggtaacaatccagggcaaagagctcgccaatttccggtacgagacttttgatcca
ctcaagccggagctgtacccaggctatgactcgtccatcttcttgcgtgccggttcggtc
aaggtcaatttccttgaagagcctttccggaagattgtggacttcctcgtcaagtttggc
aaaatgcaagccatctacaatgctgctcgtcaggctgcggctaaccaggccaaccagctg
caacagacgtcaagtcggataaagttcgacgttgtcatcaacactcccattgttgtcttc
cctcgagttgtgatgcccgaaaggccgaagcgagacgtcatcacggcctacctgggagag
atctatgcccagaacaagtttgccccgcttgacgattcggagaacgcagatattgccatg
aagctgtctgctggtatccgcaatattcgtctgacttccaacttccactacactggtgac
cgctcggaggaattggaactgatcgaccacgttgatctcgagttcaaggtcacgtacgcc
gagcacaaggagggcgtcaagcggcccgactttgacattgagggaaccatgactgacttc
aacctccgcatcactccctaccagctcaattctcttcttgagctgtccaggtctgtgcct
gccgcctttgctggtggtgctgagcagagtgacgaggaggctgagcgtgacgtcgacgat
gctactctggagcgtgctaggaccatgactggctttaatagcgaaagcagcaacgagaag
ctcatcgacatgggccctgaacttggcactcacggccaggcctggacgaagttggacctt
gtcttcacggtcaacaccattggcttggagctgattcgtgccccggaagatgccccagtt
ggtgatatggacgctgccagtctttccaagtttagcctggattcaagcgttatcaagacc
cggatggactcgaatgggagtctcgaggctgaacttgttattcaggccttcaccatcttt
gacacacggcatcgcgagaccaacaagttccgtcgcatcatgacgagcaacaacaaggat
gtccaacagttcatggccagcatcacgatgtcgggtggtgaggagaggaacgtcatcgcc
atgattgctatcgacagtcctcgtgtcatcttcgctttggactacctctttgcgttgcag
aagttcattactgttggtacgcaggttgtcgagccacctgctatcccagacaagagccca
atagagagcccggaggagatgagcgatgcagactccatgcaagttagtctcggcagacct
tcccagagtagcagccgcggaatctctccgtcgaagccagctgaagcctcgaaagcaccg
gagcccaagaagttgacctttgcctaccgcgtcaacgtggttgatgcccaagtcattctc
atcgccaacccattgagtgcgagctcagaggctctcgtgctgggaacgaagcaagtcctc
ctgtcacagcagcacgccttcaccttccagatctctcaatgcggcatgttcctgtgtcgg
atggaccgcttcgacgattcacggctgagaatcattgacgacttctccgtccagatgtcc
atggatagttcgcagccgcagacaaccaagatccatgtcgatgttgagcctcttattctt
agggtctcgctccgagatattttgctggtgatgcagacaatcacaaaagcatccgagctg
tctggtggcactcccgccaacagtaatactgctaaagcctccgatcagaaggcgaagcag
ctcaaggcaccgccaggattgaagcaacgatcggccagtggaaagggcgggtccaccctc
gctgcgagaacacgggcaagcaagaagagtgtcggcggtgtcagcacctctggtcgttcc
accaagtccgggcaactcgtgccgcatgatattgtcaaggtgcctcctagacacgaagag
ctcactgccaccattgacggagtccgtctagtgctgatcggcgatttgcacgaacttccc
attctggatatgagcatcaagaagttcacaagcaccgctgcaaactggtcttccaacctg
aaggcggaggcatccatcgagatgtacaccaacatctacaactttgccaagtccgcctgg
gagcctctgatcgagccctggcaagttggtcttggtgtagctcgtgaccaggcctctggt
gtcacctcggttgatgttgcctccaatcggacttttgatgtcaccgtcaccactgctagc
attgctctcttgtccaagtccttcgccttcttttctcaggaccaggatgttttgtccaag
cctcgcggtgctgaagcaccatatcgcatccgcaactacacggggttcaacgttgctgta
catgccaagcgacagagcagtgaggagccgacgtctctcagactggaagatgggcaggaa
gcaccttggagttttgaggactgggagaagatgcgtgagaatgttctggcagagaacggt
gttagcagcgttggggtgcagctggaaggcagtggcttcgacatggttaagaacattcgc
ctcactcgagagggcgagtttttgtatgccttgaagccaaaggctgatcaggttctgcac
aagctcttggtccacgtcgagcttggaaccgacaacgtcaaatatgtgactctgcgcagt
ccattgttggttgagaacgagacggatatccctgtcgagattggtgtgtacgatgcgcac
gagggccaccttctcaaaattgagaagattgcgcccggtgagagccggccagcaccggtt
ggggctgtgtacttgaagagtttgcttgtccgtcctgatcctggatttggatatggatgg
agcaatgacacgctgtggtggagggacttgcttaagcggccaaccaagacgatggtgtgc
aagggggaccatgcagagccattctatttccagatgtctgctcgcttcgacaaggcaaat
cccatgactaggaactacccatacatgcgtctcaaactctcagcaccagtcaccttggag
aacttgctgccttatgacttcaagtataggatatacgacaagaacaccaagaaggactgg
tctaacttcttgcgcaagggcggcgtcagccctgtccacgttgtcgagctgtcgcacctc
ttgctcctcagtgtcgatatgcaggacactgtgttcaagccgagcgagtttgccatcatc
aacgctggggccaccgatgacttcaagaaggaaacacatctcgtttgcaaggacgatgct
ggtatggcgctcaacctgcggctgcactactatcgtattccagacagcggtggtgcgttc
aaggtcaccgtgtacagcccctacgtcgtgctcaacaagacgggtatggatgtcagcgtc
cgttccaagggcttcatgcaacaggccaaggctgcggcgggtcaggcgctcatcgatatt
ggcgacggaagccaccgcaaaaccaagcccatgatgttctccttcaacagtgacgaccac
cgcaatcgtgctctactcaaggtcggcgactcggagtggagtaagccgcagagctttgac
gcgatcggaagcacgtcggaagttgtgctcaactctccaacacggaatgccgagatccat
cttggtgttactgtcgagtcgggtcagggcaagtacaagatgatcaagacggttaccctg
gcgccaagatatgtcatccaaaacaagcttggggaagacatcaacatccgggagcccagc
tcatctggccttatctcgctcaagagtggtgccttccggccattacactttctcaacaga
ggtcatgtgaagcaactttgcatgtgccatcctggtgtcgacaaccaatggacagcacct
ttcaacatctcagatctcggcacaactcacatcaagattgccaaggctggtcagcgtcag
cgcctcgttcgggttgacattctcatggaggatgccaccatattcctcaacctgtccatg
gagcaaaaggcctggcctttctccatgcgcaatgagagtgacaccgagttcaccttttat
caggtcaaccccaatatcgatgaggatggcaccgaggaccggtctggctggaggcctgtg
cgctaccgtctgccacccaggagcatcatgccctatgcctgggacttcccagccgcgaag
cacaaggaggtttgcatcagtgcttacaacaaggagcgctatgttaagctggccgagatt
ggaaacttgatgcccatgaagtttattggcaccaacgggcagtccaagatcattgacatc
aatgtcaccgccgacggcccgacacagactctcatcctgtccaactttaagcagtccaag
agtttgtaccggcaaaagtcgaacgcaggatccaccaccagtcgcgaaggcttcgaggcc
aaggagttagatacaggcactacctttagggcgcagctgcgtctgtctggcattggcgta
tccctcatcaactcacagatgaaggagttggcttacatcaccttccgtgatgtggcgctt
cggtacagtgactcgcctctctaccagactatcagcttggctgtcaagtggatccagatt
gacaaccaactctatggcggcatcttccccatgattctctaccccagcgtggttccgaag
cgcgcccaggaggttgacgctcacccgtcgttgcacgccatggtcactcgtgtcaaggat
gattcttatggcgtcgagtacatcaagtacgctaccattctcttgcaagagatgactgtc
gaactcgacgaagacttcatctatgcggtgttggagtactccaagattccgggggcgtcg
tggtcagacactgtcgaggaggacaagctctgcgatgacaacattgacatcccgcagccc
aagcagcagcagtctggcaaggacatctactttgaggttctcaacatccagcccatgcag
cttgatctgtcttttgtgcgcacggagcgtgtcaatgccgaagacaagacttcgtcgcgg
aaccctgtcatgttcttcttcaatgtcatgaccatggccattggaaacatcaacgatgcg
cccatccggttcaacgccttgatgctggagaacgtccgtgtttcaatcccgatcctgatc
cagaacatctcgaaccactacagccaagaagcactgtaccaagttcacaagatattgggc
agtgccgacttcctcggtaacccagtcggtctgttcaacaatatcagctctggcttcgcc
gacatcttttacgaaccctaccaagggctcatcatgtctgacaaacccgaggactttggt
ctcggcgtcgcccgtggcgcgggttcgttcttcaaaaaatcggtctttggcgtcagtgac
tcgctctccaaggtcactggcagttttgccaagggtcttgcggcggcaacgatggataag
cagttccaggacaggcgacgcattactcgtgctcgcaaccggccaaagcacgccatttac
ggcgtcactgcgggcgctaacagcctgttcacctctgttgcttcaggtgtgggaggtttg
gcgaggaagccacttgagggtgcggagcaagaaggtgcgctgggtttcttcaagggtatc
gggaagggtgtcgttggtctagccaccaaaccagccattggcgtcttggatttcgcgtcg
aacatctctgaaggcgtacgcaacaccacgaccgtgtttgacggctcggaactcgatcgt
gtccgtctaccccgttacattcccgcagacggtattgtccgcccctacagccaacgggaa
gcgctcggtcagtcatggctgaagcaagtggacaatggaaagtattttgacgagcagtac
attgcccacctggagctcccgacggaggacatggtggttatggtgacgtactcgaggatt
ttgctgattaggagccggaggttgcagacggagtgggatgtgccgttgaaggatattcag
actattgccaaggagaggacggggctgagcttgacattgaggggggggacgaacgggccg
tttattcctattggggaggagagtgggaggacgtttatttataggatggtggcggtggcg
gtagaggagtttaataggaggtttagggggttggagtag
DBGET
integrated database retrieval system
