Podospora pseudocomata: QC762_602190
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Entry
QC762_602190 CDS
T09797
Symbol
SYF1
Name
(RefSeq) pre-mRNA-splicing factor syf1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
QC762_602190 (SYF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsd03019
]
QC762_602190 (SYF1)
03041 Spliceosome [BR:
ppsd03041
]
QC762_602190 (SYF1)
Messenger RNA biogenesis [BR:
ppsd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
QC762_602190 (SYF1)
Spliceosome [BR:
ppsd03041
]
Complex B
Other components
Prp19-related factors
QC762_602190 (SYF1)
Complex C
QC762_602190 (SYF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_8
RPN7
ARM_TT21
NRDE-2
Motif
Other DBs
NCBI-GeneID:
87911820
NCBI-ProteinID:
XP_062740571
LinkDB
All DBs
Position
6:complement(1725349..1728550)
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AA seq
822 aa
AA seq
DB search
MALALSSGRQPDLALVSDDDYPYEQDIQRNPGSTKPWLAYIDYKIQHGTLREQAYVMERA
CIQLPRSYKLWKMYLRFRTKHVAKLNAAIFTSEYQKVNALFERALILLNKMPRIWEMYLK
FLMQQPLVTLTRHTFDRALRALPITQHNRIWALYRPFANSAEGLTAVKIWRRYTQVHPED
AEDFIELLIQSELYTEAVKRYIDILNNPRFQSKNGKGHYELWSEMVDLLVEHAVDIETGH
ETGIDVERIIRSGIERFADQRGKLWCGLATYWIRRGSFERARDVFEEGITTVMTVRDFTL
IFDSYTEFEESVIGALMEMASGRAEKGVVDEVADFDLDIRMMRFEHLMDRRPFLLNDVLL
RQNPNNVTEWEKRVALWGDNKQEVVQTYTDAIAAIQPKKAVGAFHQLWANYAKFYENGGD
IRSARTIMEKAVKVPFKSVAELADMWIEWAEMELRNENFDDAVRIMAKAVQAPKRSNVDY
FDETLSPQQRVHKSWKLWSFYVDLVESVSTLEETKKIYERIFELRIATPQTVVNYANLLE
EHKYFEESFKIYERGLDLFSYPVAFELWNLYLTKAVDRKISIERLRDLFEQAVEDCPAKF
AKVIYLMYGNLEEERGLARHAMRIYERATRAVSDEDRADMFNFYITKSASNFGLPSTRPI
YERAIATLPDNEAKDMCLKFADMEKRLGEIDRARAIYGHGSQFCDPRTNPGFWQKWEQFE
VQHGNEDTFKEMLRIKRSVQAQYNTDVNFIASQALARAQQAKNGEGGGEVDQEAADAMEQ
LERQARAPAGFVAASEGIKGSVVAPKVVEVANPDAIELDDME
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggcactctcctctggccgccagcctgatctggcgcttgtgtccgatgatgac
tacccctacgagcaagacatccaacgaaaccccggcagcaccaagccatggctcgcctac
attgactacaagattcaacatgggacacttcgtgagcaagcctacgtcatggagagagca
tgtatccaattgccgcgctcctataagctgtggaaaatgtatttacgattccgaacgaag
cacgtcgcaaagctcaatgccgccatcttcacctccgaataccaaaaggtcaatgcgctc
tttgagcgggcgctaatcctcctcaacaaaatgccgcgcatctgggagatgtacctcaag
ttcctcatgcagcagcccctcgtcaccctcacacgacacaccttcgaccgcgcactccga
gcacttccgattacacaacacaacaggatatgggccttgtaccgaccgttcgccaactcg
gccgagggtttgacggctgtcaagatctggaggcgctacacccaggtccacccagaggat
gccgaagactttatcgaacttttgattcagagcgagctgtacaccgaggcagtcaagagg
tacatcgacattctcaacaacccacgattccagagcaagaacgggaaggggcactacgag
ctttggagcgagatggtggatctgttggtggagcacgctgtcgacattgaaacgggacac
gaaacaggcatagacgtggaaaggatcattcggagcggaatcgaacggttcgcggaccag
cgcgggaaactgtggtgcggcctggcaacctactggattcgaaggggcagctttgagagg
gcaagagatgtttttgaggagggcatcacaacagttatgacggtccgggactttacgctc
atttttgactcgtacactgagtttgaggagtctgttattggggcactgatggagatggcc
tcggggcgggcggaaaagggcgtggtggatgaggtggctgattttgatctggatattagg
atgatgcggtttgagcatctgatggaccgacgaccgttcctcctgaacgatgtgttacta
cgacagaacccgaacaatgtcaccgagtgggagaagagagttgctctgtggggagacaac
aagcaggaggttgtacaaacttatacggatgctatcgctgctattcagccaaagaaggcc
gttggcgccttccatcagttgtgggctaactatgccaaattctacgaaaacggaggggat
atccggagcgcgaggactatcatggaaaaggcggtcaaggtgcccttcaagtcggtagct
gagctggccgacatgtggatcgagtgggcagagatggaactccgcaacgaaaacttcgac
gatgccgtccggatcatggccaaagctgtccaagccccgaagagatccaatgtcgactac
tttgacgagacattatctccccaacagcgagtacacaagagctggaagctgtggtcgttc
tacgtcgacctcgtcgagagcgtcagcaccctggaggaaaccaagaagatttacgaaaga
atattcgagctccgcatcgccactccccagactgtggtcaactacgccaacctactcgag
gagcacaagtactttgaagagtctttcaagatctacgagcgcggccttgatctcttctct
taccccgtagcctttgagctatggaatctctacctaaccaaggccgtcgaccgcaagatc
agcatcgagcgtctgagagatctctttgaacaagccgttgaagactgcccggccaagttc
gccaaggtgatctacctcatgtacggcaacctggaagaggagcgcggtctagcccggcac
gcgatgcgcatttatgagcgggcaacgcgtgccgtgtcggacgaggacagggcggacatg
tttaatttctatattaccaagtcagcctctaatttcggtctcccatccacgcgccctatt
tacgagcgcgccatcgccaccctccccgacaacgaagcaaaggacatgtgcctcaaattc
gcggacatggaaaaacgtcttggggaaatcgaccgtgcaagggccatctacggccatgga
tcccagttttgcgatcccaggacaaacccggggttttggcaaaaatgggagcagtttgag
gtgcagcatggcaatgaggacacgttcaaggagatgctgcggatcaagcggtcggtgcag
gcgcagtacaacaccgatgtcaactttattgcctcgcaggcgctggcgagagcacagcag
gccaagaacggcgaaggaggaggagaggttgatcaggaggcggcggacgcgatggagcaa
ctggaacggcaggctcgtgccccggcgggatttgttgcggcgagcgaggggatcaagggg
agtgtggttgctcccaaggtggtcgaggtggcaaacccggatgctatcgagcttgatgat
atggaatga
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