KEGG   Podospora pseudocomata: QC762_603649
Entry
QC762_603649      CDS       T09797                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ppsd  Podospora pseudocomata
Pathway
ppsd03018  RNA degradation
ppsd03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ppsd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    QC762_603649
  09123 Folding, sorting and degradation
   03018 RNA degradation
    QC762_603649
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppsd03019]
    QC762_603649
   03041 Spliceosome [BR:ppsd03041]
    QC762_603649
Messenger RNA biogenesis [BR:ppsd03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     QC762_603649
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     QC762_603649
Spliceosome [BR:ppsd03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    QC762_603649
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 87911963
NCBI-ProteinID: XP_062740417
LinkDB
Position
6:complement(1205256..1205833)
AA seq 129 aa
MLPLGLLNAAQGHPMLVELKNGETLNGHLVLCDTWMNLTLREVVQTSPEGDKFVRLPEVY
VKGNNIKYLRVPDEIIDIVKEQQQSGGGGYRGGRGGHQRGDNGGRGGGDRGRGGRGRGGR
GGRGGNRGA
NT seq 390 nt   +upstreamnt  +downstreamnt
atgctgcctcttggtcttcttaacgcggcgcagggccacccgatgctggtcgagctcaag
aacggggagacgctgaatgggcatttggtgctgtgcgatacttggatgaatttgacgttg
agggaggtggtacagactagtcctgagggggataagtttgtgaggttgccggaggtttat
gtcaaggggaataatattaaatacctacgggttccggacgagattatcgatattgtcaag
gagcagcagcagtcgggtgggggtgggtatagagggggacggggaggacatcagagaggg
gataatggtgggaggggtgggggtgatagagggaggggtgggagagggagaggtgggagg
ggtgggagaggtgggaataggggtgcgtga

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