Podospora pseudocomata: QC762_603649
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Entry
QC762_603649 CDS
T09797
Name
(RefSeq) hypothetical protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03018
RNA degradation
ppsd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
QC762_603649
09123 Folding, sorting and degradation
03018 RNA degradation
QC762_603649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsd03019
]
QC762_603649
03041 Spliceosome [BR:
ppsd03041
]
QC762_603649
Messenger RNA biogenesis [BR:
ppsd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
QC762_603649
mRNA degradation factors
5'-3' decay
Lsm complex
QC762_603649
Spliceosome [BR:
ppsd03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
QC762_603649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
87911963
NCBI-ProteinID:
XP_062740417
LinkDB
All DBs
Position
6:complement(1205256..1205833)
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AA seq
129 aa
AA seq
DB search
MLPLGLLNAAQGHPMLVELKNGETLNGHLVLCDTWMNLTLREVVQTSPEGDKFVRLPEVY
VKGNNIKYLRVPDEIIDIVKEQQQSGGGGYRGGRGGHQRGDNGGRGGGDRGRGGRGRGGR
GGRGGNRGA
NT seq
390 nt
NT seq
+upstream
nt +downstream
nt
atgctgcctcttggtcttcttaacgcggcgcagggccacccgatgctggtcgagctcaag
aacggggagacgctgaatgggcatttggtgctgtgcgatacttggatgaatttgacgttg
agggaggtggtacagactagtcctgagggggataagtttgtgaggttgccggaggtttat
gtcaaggggaataatattaaatacctacgggttccggacgagattatcgatattgtcaag
gagcagcagcagtcgggtgggggtgggtatagagggggacggggaggacatcagagaggg
gataatggtgggaggggtgggggtgatagagggaggggtgggagagggagaggtgggagg
ggtgggagaggtgggaataggggtgcgtga
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