Podospora pseudocomata: QC762_605030
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Entry
QC762_605030 CDS
T09797
Symbol
PRP43
Name
(RefSeq) DEAH-box ATP-dependent RNA helicase prp43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
QC762_605030 (PRP43)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppsd03041
]
QC762_605030 (PRP43)
03009 Ribosome biogenesis [BR:
ppsd03009
]
QC762_605030 (PRP43)
Enzymes [BR:
ppsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QC762_605030 (PRP43)
Spliceosome [BR:
ppsd03041
]
Complex A
U2 snRNP components
U2 related factors
QC762_605030 (PRP43)
Complex B
QC762_605030 (PRP43)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
QC762_605030 (PRP43)
Ribosome biogenesis [BR:
ppsd03009
]
Eukaryotic type
90S particles
Helicases
QC762_605030 (PRP43)
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
HA2_N
SRP54
AAA_19
AAA_30
T2SSE
AAA
Flavi_DEAD
AAA_23
nSTAND3
AAA_7
Motif
Other DBs
NCBI-GeneID:
87912104
NCBI-ProteinID:
XP_062740279
LinkDB
All DBs
Position
6:complement(731472..734040)
Genome browser
AA seq
812 aa
AA seq
DB search
MCLPNKKLRQPCGRHRQGKASANSEIPAIPSVLCRISHLISALTPLTFGMADQKGTKRSS
VESDAQDSKRIKTDDKPNPYLAHLNMDGANDFKSPLDEMERHNTTALQAAKAEDSDINPW
TGKPHSENYFKILKTRRDLPVSKQREEFLELYHKTQILVFVGETGSGKTTQIPQYVLYDE
MPHQTGKLIACTQPRRVAAMSVAQRVANELDVELGQEVGYSIRFENRTGPKTLLKYMTDG
QLLREAMHDPNMNRYSCIILDEAHERTLATDILMALLKEIAHRRSDLKIIVMSATLDAQK
FQSYFSLRKEDPPAPLLAVPGRTYPVEIFYTPEPERDYVEAAVRTVLQIHAVEPEGDILL
FLTGEEEIEDACRRISLEVDDMVRESDAGPLAIYPLYGTLPPHQQQKIFDKAPEPFRKGG
RPGRKCIVATNIAETSLTIDGIVYVVDPGFSKQKIYNPRSRVESLLVSPISKASAQQRAG
RAGRTRPGKCFRLYTEKAFKKELIEQTYPEILRSNLSNTILELKKLGVEDLVHFDFMDPP
APETMMRALEELNYLACLDDDGGLTKLGSLASEFPLDPALAVMLISSPEFYCSNEILSIT
SLLSVPQIWIRPNNNRKRADEMKAQFAHPDGDHLTLLNAYHAYKGAEQNGEDIKKWCHEH
FLSFRHLSSADNVRAQLKRIMETHEIELVSTPFNNKDYYTNIRRALLAGFFMQVAMRESS
NSKIYKTVKDDQMVMIHPSTVVSSPYDWVVYNEFVLTTKQYIRTVTNVRPEWLLEIAPVY
YDVDTFEKGEIKSALVRLTEKVKRRQAMKGGY
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgtgcttgccaaacaaaaagttgcggcagccttgtggacggcatcgacagggcaaggca
agcgcaaacagtgaaatccccgccattccatctgtcttgtgcagaatctctcacctcatc
tctgcactcactcctctcaccttcggaatggccgatcaaaagggcacgaagcgatcgagc
gtggaaagcgacgcccaggactcgaagcgcatcaagaccgacgacaagcccaacccatat
ctcgcccacctcaacatggacggcgccaacgacttcaagtcgcctctcgacgagatggag
cgccacaacaccaccgcccttcaggccgcgaaggctgaggactcggacatcaacccctgg
accggcaagccgcattcggagaactacttcaagatcctcaagactcgtcgcgacctgccc
gtctccaagcagcgcgaagagttcctcgagctctaccacaagacccagattctcgtcttc
gtcggtgagactggttccggcaaaaccacacagatccctcagtatgttctttacgacgaa
atgccacaccagaccggcaagctcattgcttgcacgcagcctcgtcgtgtcgccgccatg
tcggtcgcccagcgtgtcgcaaacgaactcgatgttgaactgggtcaggaagtcggttac
agcatccgtttcgagaacaggaccggccccaagactctcctcaagtacatgacggatggt
cagctgctgcgcgaggccatgcacgatcccaacatgaaccggtacagctgcatcattctc
gatgaagctcacgaacgtacgctcgccaccgatatcctgatggccctcctcaaggagatt
gcccacagaagaagcgacctgaagatcattgtcatgtctgccacgctcgatgcgcaaaag
ttccaatcctacttcagcttgcggaaggaggaccctcccgcccctttgctcgccgttccc
ggtcgcacataccctgtcgagatcttttacacccccgaacccgagcgagattacgtcgag
gccgccgtcaggacagttcttcagattcatgcggttgagcccgagggtgacatcctgctc
ttcctgacgggtgaagaggagattgaggatgcctgccgccggatcagtttggaggtggat
gatatggtcagagaatcagacgctggtccgctggccatctaccctctttacggtactttg
ccaccacatcaacaacaaaagatcttcgacaaagcccccgagccattccggaaggggggt
cgtcccggccgcaagtgcatcgtggcgaccaacattgccgaaacctcgttgacgatcgac
ggtatcgtctatgtcgtggaccctgggttcagcaagcaaaagatctacaaccctcgctct
cgtgtggaatcgctcttggtttctcccatctccaaggcctcggcccaacagagagccggt
cgtgccggtcgtaccaggccgggaaagtgcttccgtctctacaccgagaaggcctttaag
aaagagcttattgagcagacttatcctgaaattctccggtctaacctctccaacaccatt
cttgaactcaagaagcttggtgtcgaagatttggtgcactttgacttcatggacccacca
gcccctgagaccatgatgcgcgccctcgaggaactcaactaccttgcctgtctcgatgat
gacggtggtctcactaagcttgggagcttggcgtctgagttccccttggatcccgctctg
gccgtcatgctcatctcttctcccgagttctactgctccaacgagatcctctccatcacc
tcgttgttgtcggtacctcaaatatggatccgtcccaacaacaaccgcaagcgtgccgac
gagatgaaggcccagtttgcccaccccgacggcgaccacctgacgcttctcaacgcctac
cacgcctacaagggcgccgagcaaaacggtgaggacatcaagaagtggtgccacgagcac
tttttgtcgttccgtcacctgtcctctgccgacaatgtccgggctcagctcaagcgcatc
atggagacgcacgagattgagctcgtgtcgacgccgttcaacaacaaggactattacacc
aacattcgacgggcgctgctggcggggttttttatgcaggtcgccatgagggagagctcg
aatagcaagatttacaagacggtgaaggacgaccagatggtgatgattcatccgagcacg
gtggtgtcgagcccgtatgattgggtggtgtacaatgagtttgtgctcacgacgaagcag
tatatccggacggtgacgaatgttaggcccgagtggcttcttgaaattgcgccggtttat
tatgatgttgatacttttgagaagggggagatcaagtctgcgctggtgaggttgacggag
aaggtgaagaggaggcaggctatgaagggggggtattga
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