Podospora pseudocomata: QC762_605400
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Entry
QC762_605400 CDS
T09797
Symbol
RAD3
Name
(RefSeq) TFIIH/NER complex ATP-dependent 5'-3' DNA helicase subunit
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03022
Basal transcription factors
ppsd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
QC762_605400 (RAD3)
09124 Replication and repair
03420 Nucleotide excision repair
QC762_605400 (RAD3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppsd03021
]
QC762_605400 (RAD3)
03036 Chromosome and associated proteins [BR:
ppsd03036
]
QC762_605400 (RAD3)
03400 DNA repair and recombination proteins [BR:
ppsd03400
]
QC762_605400 (RAD3)
Enzymes [BR:
ppsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
QC762_605400 (RAD3)
Transcription machinery [BR:
ppsd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
QC762_605400 (RAD3)
Chromosome and associated proteins [BR:
ppsd03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
QC762_605400 (RAD3)
DNA repair and recombination proteins [BR:
ppsd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
QC762_605400 (RAD3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SNF2-rel_dom
AAA_11
Sigma54_activat
Herpes_UL14
Motif
Other DBs
NCBI-GeneID:
87912138
NCBI-ProteinID:
XP_062740319
LinkDB
All DBs
Position
6:899663..903264
Genome browser
AA seq
792 aa
AA seq
DB search
MEFFIDDLRVLFPYPRIYPETLDAGGNCVLEMPSGTGKTVTLLSLIVAYQMSSQEKRPLI
YCSRTMSEIEKALVELKALMKFRAERLGHEEDFRAMGLTSRKNLCLHPDVKREKSGSVVD
ARCRSLTAGFIQEKKRKGEDVDVCVYHDNLDNLEPHNLIPNGVWSLDGLLRYGQKHTQCP
YFTARRMMSQCNVVIYSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNIDNVCIESLSTDI
TEESLRRATRGAQFLENRINEMRDSDQQKLQDEYEKLVEGLRGNDETREEDSFMANPTLP
EDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLAHLKEYTFIEKKP
LRFCAERLTSLVRTLELTRIEDYQPLQEVATFATLVATYEKGFLLILEPYESDTAEVPNP
VLHFTCLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLNFETVVQESYSMTLARRSFL
PMIVTRGSDQATISTGFQVRNEPSVVRNYGSLLVEFAKITPDGIVLFTPSYLYLESLISM
WQGMGVLDEVWKYKLILVETPDAQETALALETYRTACKNGRGAVFLCVARGKVSEGVDFD
KEFGRTVINIGVPFQYTESRILKARLEFLRETYRIRENDFLSFDAMRHAAQCLGRVIRGK
DDYGVMVLADRRFKSKIQQLPKWIHQALLGADTNLSTDMAVSNARRFFKMIAQPFRTEDQ
EGISIWTLEQLKEHQRKMQEELIRELQATEEKRVNQQQQAQQAQQFISARERPDSDYEMD
EDDEAELMALDP
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggagttcttcatcgatgaccttcgggtcctcttcccatacccccgaatctatccagaa
acgctcgatgccggcggaaactgcgttttggaaatgccttcgggcacagggaaaactgtc
accctgctctccctcattgtggcctatcagatgtcgtcacaagagaagcgaccgctcatc
tactgctcccgtaccatgtccgagatcgaaaaggctctggtagaactcaaggccctgatg
aagtttcgagccgagagactggggcatgaagaggatttccgggccatgggtctaacgtcc
agaaagaatctatgtctgcacccagacgtgaaacgagaaaagagcggtagtgttgtcgat
gcccgctgccgcagcttgacagccggcttcattcaggagaagaagaggaagggcgaagac
gtagacgtctgcgtttatcacgataacctcgacaaccttgaaccgcacaatctcataccc
aacggtgtttggtctctcgatggcctgctcagatacggccagaaacacacgcaatgcccc
tatttcaccgcgcggaggatgatgagccagtgcaacgtggtgatttacagctaccactat
ctgctcgacccaaagattgccgagcgtgtttccaaagacttctccaaggactgcatcgtt
gtctttgacgaggctcacaacatcgacaacgtctgcatcgaatcactcagcactgacatc
actgaggaatctctacggagggctaccaggggagcccagtttctagagaacaggatcaat
gaaatgcgagactctgatcagcaaaagctgcaagacgagtatgagaagttggttgagggt
ctcaggggcaacgatgaaactcgcgaagaggactcgttcatggcgaatccaacccttcca
gaagaccttctcaaagaagcagtgccaggtaacatcagacgagccgagcactttgttgca
tttctgaggagattcatcgagtacctcaagacccgcatgaaagtccggcaggtcatctca
gagacccccccttcttttctagcccatctgaaggagtacacttttatcgagaagaagccg
ctccgattctgcgccgagcgactcacgtccctggtgaggacgctggagctgaccagaatc
gaagactaccaacccctgcaagaggtggccacctttgcaaccctggtagcgacctacgag
aagggtttcctcctgatcctagaaccctacgaatcagacacagctgaggtgcccaacccg
gtgctccacttcacctgcctggacgctgccatcgccatcaagccggtatttgaccggttc
agctcggtcatcatcacctctggtaccatctcgccactcgagatgtaccccaagatgctc
aactttgagacggtggtgcaagagtcatattccatgaccctggcaaggagatcattcctg
cccatgattgtcacgcggggaagcgaccaagccacaatctcaacgggcttccaggtccgg
aacgaacctagtgtcgttcgaaactacggcagtctactcgtggagtttgcaaagatcaca
cctgacggaatcgtcttgttcaccccgagctacttgtacctcgaatcgctcatttccatg
tggcagggcatgggcgtgttggacgaagtgtggaagtacaagctcatcctcgtcgagacg
cccgacgcgcaggagacggcgctggcgctcgagacgtaccgcaccgcgtgcaagaacggg
aggggggcggtatttttgtgcgtcgcgagagggaaggtgtcggagggcgttgattttgac
aaggagtttggccgtactgtcatcaacatcggtgttccgtttcagtacaccgagtcacgc
atcctgaaagcgcggttggagtttttgagggagacgtaccgcatcagggagaatgatttt
ctctcttttgatgcgatgaggcatgctgcccagtgcttggggagggttatccgcggcaag
gacgactacggcgtcatggtgcttgcggataggaggttcaagtcaaagattcagcagctg
cccaagtggatccatcaagcgctgcttggtgcggatactaatctgagtacggatatggcg
gttagtaacgcgaggaggtttttcaagatgattgcccagcctttccgaactgaagaccag
gaaggtatcagtatctggacgcttgaacagctcaaggagcatcagaggaagatgcaggag
gagttgattagggagttgcaggctacggaggagaagagggtgaatcaacagcagcaggcg
caacaggcgcaacagtttatttctgcgagggagaggccggatagtgattacgagatggat
gaggatgatgaggctgagttgatggcgttggatccgtag
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integrated database retrieval system
