Podospora pseudocomata: QC762_608390
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Entry
QC762_608390 CDS
T09797
Symbol
PAT1
Name
(RefSeq) DNA topoisomerase 2-associated protein pat1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QC762_608390 (PAT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsd03019
]
QC762_608390 (PAT1)
Messenger RNA biogenesis [BR:
ppsd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
QC762_608390 (PAT1)
mRNA degradation factors
5'-3' decay
Decapping complex
QC762_608390 (PAT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
87912422
NCBI-ProteinID:
XP_062741103
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Position
6:complement(3338023..3341529)
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AA seq
840 aa
AA seq
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MSFFGFNNGHNTAATGFSQAHNPFQGLSGRDDDGDALEFEDTYDGLGDQLEETKDAYNDD
TFGDTSDIAAAPVGKDFDFFSQTAKVQNAIEEEHYLFNRQQPPARSAQPAQPVQQMSYGQ
PSLQSAASYGYTSQGHYRTGYEKYSNDKYNNNEPVPELQVDASLWGVAPKKPAQPAPQVS
QQAAQSSSAPSRKILSLEEVEAQMRAQAQAKAAQATPSPAPHAQGPSQIPYDPAIQFAQP
AQQQFVPPVDHTRQALPIHVLQRPQSTQASSPQPPVQPAAHQRQPSSTSVQPTQILQNPN
RLSGDAARMGMQQHPTPPVPGPSAPPTQPAHRQQGSFGRQPNIITHPSQVSQLTEEQKAA
YMEQEAKRAKRNHKIYLMSRDNGVMTPQDKSFVTRIQLQQLVAATGNPNEHGTDESLAED
FYYQVHSSLQGGQRQHPNQPLNNFAQTYLFQTGNRSGHMRRHRGPENHMQRMEQQVQRAV
EAAKNKPKNKQLVIEGSLGKISFSNAKTPKPLLNIKRTESTDDANRPSSAHKVVSAGDRK
SDLRTIERIYTILMKMEDHDRVLPPPPTSDTDVEGHQRGMRWSNEAQALNQDLWSALRVY
DEPQPGHPHPFVALLSYNKGMKAMNRIFRHLSQEQRTTILTLVIVNLDKLDVVVNAQVTS
AAVQLTAAMRENIHIFSNAVMNTLFNFLNELDLDIVAGLLSILSKQRLDIIAKSRIGASM
ITMILSRAEIIKVNVGNTHPSWQAWDMCHTDFFDRLEPTLPYMFPGSVNTADDIYVWQLL
AALGIGASPEQQQRLVLAVKDRVMDTVALSKTLPADMGAQRLQNVNLFMRSIGLDVELLQ
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttctttggattcaataacggccataacacggcggccactggcttttcacaggcc
cacaatcccttccaaggcctttctggccgagacgacgatggcgatgctttggagtttgaa
gacacctatgacgggcttggagatcagctcgaagaaaccaaggacgcctacaacgatgat
actttcggggatactagcgacatagctgccgcgcctgttggcaaggattttgatttcttc
tcacaaactgccaaggttcagaatgccatcgaggaggaacattatcttttcaaccgtcag
cagccgccagcccggtccgcccagcctgcccagcctgtccagcagatgtcttacggtcag
ccgtctcttcaaagcgcagcctcgtacggctatacatctcagggccactatcgcaccggc
tacgagaagtattcaaatgacaagtacaacaacaacgagcccgttcccgaattgcaggtc
gatgcctctctctggggtgtggcgccgaagaagccggcacagcctgcccctcaggtctcc
cagcaggctgcccagtcgagttccgcgcccagtcgcaagattctaagcctggaggaagtc
gaggctcaaatgagggctcaggcccaggccaaggctgcccaagctacaccatctccggct
cctcatgctcaaggcccttcgcaaatcccttatgacccggccattcaatttgctcaaccg
gctcagcaacaatttgttcccccggttgatcataccagacaagctctcccgattcacgta
ctgcaaagacctcagtccacccaagcgtcttcgccccagcccccggtccaacctgctgct
catcaacggcaaccgtcgtcgacttctgttcagccaactcaaatcttgcagaatccgaat
cgtctctctggagatgccgctagaatggggatgcagcagcatcccacgcctccggtacca
gggccttctgcccccccaactcaacccgcccatagacagcagggttctttcgggagacag
cccaacatcataacgcatccatcccaggtgtcccagcttaccgaagagcaaaaggctgcc
tacatggaacaggaggctaagcgcgctaaacggaaccacaagatctacctgatgtctcgt
gacaacggtgtcatgacaccccaggacaaaagcttcgtcacacgcattcagcttcagcag
cttgttgccgccactggcaacccgaacgagcacgggactgatgagtcgcttgccgaagat
ttttactatcaagttcatagctcgcttcagggcggtcagaggcaacaccccaaccagccg
ctcaacaactttgcacagacctatcttttccaaactggcaacaggtcgggtcacatgcgt
cgccaccgaggccctgagaatcatatgcagcgtatggaacagcaggtccagcgagctgtt
gaagctgccaagaacaagcccaagaacaagcaactcgtcatcgagggaagtctgggcaaa
atttcattcagcaacgccaagacacccaagccgctgcttaacatcaagcgcacagagagc
accgatgatgccaaccgtcctagcagtgcgcacaaggtcgtcagtgccggcgatcgtaag
agtgatctgcgcaccattgaacgcatctataccatactcatgaagatggaagaccacgac
cgcgtcctgccacctccccctacaagcgacaccgatgttgaaggtcaccagcggggcatg
cgttggagcaacgaagcccaagccctgaaccaggatctgtggtccgcgctgagagtctac
gatgaacctcaaccgggacacccccatccttttgttgcgcttctgtcatataacaagggt
atgaaggctatgaacaggatcttccgccatctcagccaagagcagcgcaccaccattctc
accttggttatcgtcaatcttgacaagcttgatgttgttgtcaacgcgcaggtgacgtcc
gccgcggtccagctgacagctgcaatgcgcgagaatattcacattttctccaacgccgtc
atgaatacgctcttcaactttttgaacgagctcgatcttgacatcgttgccggtctgttg
tctattctttccaagcaacgattggacattattgcaaagagtcgcatcggagcttcgatg
atcaccatgatcctgagccgcgccgaaattattaaggttaatgttggaaacacccatcca
tcctggcaggcttgggacatgtgtcacactgactttttcgatcgtctcgaacctacgctt
ccctatatgttccctggctctgtgaacaccgcggatgacatttacgtatggcaactgctc
gcggcgcttggcataggagctagccccgagcagcagcagaggcttgtacttgctgtcaag
gaccgcgtcatggacacggtcgctttgtcaaagacactccccgcagacatgggcgcccag
cgtctccagaatgtgaacctcttcatgcgcagcattgggttggatgtcgagcttctacag
taa
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