KEGG   Podospora pseudocomata: QC762_705590
Entry
QC762_705590      CDS       T09797                                 
Symbol
CDC48
Name
(RefSeq) AAA ATPase cdc48
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
ppsd  Podospora pseudocomata
Pathway
ppsd04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ppsd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    QC762_705590 (CDC48)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppsd03019]
    QC762_705590 (CDC48)
   03009 Ribosome biogenesis [BR:ppsd03009]
    QC762_705590 (CDC48)
   04131 Membrane trafficking [BR:ppsd04131]
    QC762_705590 (CDC48)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ppsd04147]
    QC762_705590 (CDC48)
Messenger RNA biogenesis [BR:ppsd03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     QC762_705590 (CDC48)
Ribosome biogenesis [BR:ppsd03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    QC762_705590 (CDC48)
Membrane trafficking [BR:ppsd04131]
 SNARE
  SNARE associated proteins
   Others
    QC762_705590 (CDC48)
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    QC762_705590 (CDC48)
Exosome [BR:ppsd04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   QC762_705590 (CDC48)
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 AAA_5 AAA_2 AAA_33 AAA_22 TIP49 CDC48_2 AAA_14 nSTAND3 Mg_chelatase RNA_helicase AAA_28 AAA_7 IstB_IS21 NPHP3_N Parvo_NS1 DUF815 AAA_18 ATPase AAA_17 Vps4_C AAA_25 AAA_lid_PRS2_C AAA_24 ResIII ABC_tran Sigma54_activat TsaE AAA_30 NACHT Sigma54_activ_2 KAP_NTPase
Other DBs
NCBI-GeneID: 87913319
NCBI-ProteinID: XP_062739210
LinkDB
Position
7:1350033..1353707
AA seq 824 aa
MAPEPSADHPEHKKKVNLMDASGAERKDEDDTATAILKKKKKPNQLMVTDAVNDDNSIIA
LSNNTMDTLQLFRGDTVLVRGKKRKDTVLIVLADDDLDDGSARINRVVRHNLRVKHGDMI
TIHPCPDIKYAKRIAVLPIADTVEGLTGSLFDVFLAPYFREAYRPVRQGDLFVVRGGMRA
VEFKVVEVDPPEYGIVAQDTVIHCEGEPIQRDEEENNLNEVGYDDIGGCRKQMAQIREMV
ELPLRHPQLFKSIGIKPPRGVLLFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAG
ESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSN
VVVMAATNRPNSIDPALRRFGRFDREVDIGVPDPTGRLEILQIHTKNMKLGDDVDLEQIA
AETHGYVGSDIAALCSEAAMQQIREKMDLIDLDEDTIDAEVLDSLGVTMENFRFALGVSN
PSALREVAVVEVPNVRWEDIGGLETVKEELKESVQYPVDHPEKFLKFGMSPSRGVLFYGP
PGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCIVFLDEL
DSIAKARGGSVGDAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDPALCRPGRL
DSLIYVPLPDEAGRLSILTAQLRKTPVADDVDLNYIASKTHGFSGADLGFITQRAVKLAI
REAISTEIQRTKEREANGEDVDMEGEEDPVPELTKRHFEEAMQMARRSVSDVEIRRYEAF
AQQMKNAGPGAYFKFPEGGVEGAAGNGGAGNSFGDAGDDEGLYD
NT seq 2475 nt   +upstreamnt  +downstreamnt
atggctcccgagcctagtgccgatcaccctgagcacaagaagaaggtcaacctcatggat
gcctctggtgctgagcgcaaggatgaagatgacaccgccaccgccattctcaagaagaag
aagaagcccaaccagctgatggtgacggatgccgttaatgacgacaactccatcatcgcc
ctctccaacaacaccatggacactctccagctgttccgtggcgacactgtcttggttcgt
ggcaagaagagaaaggacactgtgttgatcgtccttgccgacgacgacctcgatgatggc
agtgcccgcatcaaccgtgttgtccgtcacaaccttagggtcaagcacggtgacatgatc
acaattcacccatgccccgatatcaaatatgccaaacgtattgccgttctcccaatcgcc
gacaccgtcgagggccttaccggctctctctttgacgtgttcctcgctccttatttccgc
gaagcctaccgccccgtcagacaaggtgacctcttcgtggtacgcggaggcatgagagcg
gtcgagttcaaggttgtcgaggttgaccctcctgagtacggcatcgtcgctcaagatacg
gttatccattgcgagggcgagcccatccagcgtgatgaggaggagaacaacctcaacgag
gttggctatgacgacattggtggttgccgcaagcagatggctcagattcgtgaaatggtc
gagctgccactccgccaccctcagcttttcaagtcgattggtatcaagcccccacgtggt
gtgctccttttcggacctcctggtaccggtaagacactcatggctcgtgctgttgccaac
gagacgggtgccttcttcttcctgatcaacggtcccgagattatgtccaagatggccggt
gaatccgagtccaacttgagaaaggcgttcgaagaggctgagaagaactccccggctatc
atcttcattgacgagatcgattccatcgcccccaagcgtgacaagaccaacggcgaggtt
gagcgtcgcgttgtctctcagctcttgaccctcatggacggcatgaaggcccgttccaac
gttgtggtcatggccgctaccaacagacccaactctattgatcctgccctccgccgcttc
ggtcgtttcgatcgtgaggtcgacattggtgtccctgacccaactggccgtcttgagatt
ctccagatccacaccaagaacatgaagcttggtgacgacgttgatctcgagcagatcgct
gctgagactcacggttacgtcggttccgatattgccgccctctgttccgaggctgccatg
cagcagattcgtgagaagatggatctcattgatctggacgaggataccatcgatgccgag
gtcctcgactctcttggtgtgaccatggagaacttccgcttcgcccttggcgtgtccaac
ccctccgctcttcgcgaggttgccgttgtcgaggttcccaacgtccgctgggaggatatc
ggtggtctcgagaccgtcaaggaggagctcaaggagagtgttcagtatcccgtcgatcac
cctgagaagttcctcaagttcggcatgtccccatcccgcggtgtcctgttctatggtcct
cctggtacgggtaagacaatgttggcaaaggctgttgccaacgagtgcgctgccaacttc
atctctgtcaagggtcctgagctgctttccatgtggttcggtgagtctgagagcaacatt
cgtgacattttcgacaaggctcgtgccgccgctccttgcattgtcttcctcgacgagttg
gactctattgccaaggcccgtggcggttccgttggtgatgctggcggtgcttccgaccgt
gtcgtcaaccagctccttactgaaatggacggcatgacctccaagaagaacgtcttcgtc
attggcgctaccaaccgtcccgagcagcttgaccctgccctgtgccgtcctggtcgtctc
gactccctcatctatgtccctcttcccgatgaggctggccgtctcagcatcttgaccgct
cagctccgcaagactcctgtcgctgacgatgtcgacctcaactacatcgcttccaagacc
cacggcttctccggtgccgatcttggtttcatcacgcagcgcgctgtcaagcttgccatc
agggaggccatctctaccgagatccagcgcaccaaggagcgcgaggctaacggtgaggat
gtcgatatggagggcgaggaggaccccgttcctgagctcaccaagcgccacttcgaggag
gccatgcagatggctcgccgttccgtcagtgatgtcgagattcgtcgctatgaggccttt
gcccagcaaatgaagaacgccggtccaggcgcctacttcaagttccccgagggtggtgtt
gagggtgctgccggcaacggtggtgctggcaactcgttcggtgatgctggtgatgatgag
ggtctctatgactaa

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