KEGG   Podospora pseudocomata: QC762_709710
Entry
QC762_709710      CDS       T09797                                 
Symbol
PFS2
Name
(RefSeq) pre-mRNA cleavage and polyadenylation factor (CPF) complex subunit
  KO
K15542  polyadenylation factor subunit 2
Organism
ppsd  Podospora pseudocomata
Pathway
ppsd03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ppsd00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    QC762_709710 (PFS2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppsd03019]
    QC762_709710 (PFS2)
Messenger RNA biogenesis [BR:ppsd03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     QC762_709710 (PFS2)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_Prp19 Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 WD40_Gbeta EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st ANAPC4_WD40 Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_WDR75_1st PEP5_VPS11_N Beta-prop_WDR11_2nd Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_WDR75_2nd PROPPIN Beta-prop_ACSF4 Nucleoporin_N
Other DBs
NCBI-GeneID: 87913727
NCBI-ProteinID: XP_062739665
LinkDB
Position
7:2855056..2857509
AA seq 631 aa
MARRALAGVATMVLCHRELEVDLTEPSFPPPGPVTDYGATIVHWMRNRRPGYQGSYRGEV
ERPSASYIVDMLPPIARRSNPADTVPTKHLHSSLNKIKHPVNVVRWTPEGRRLLTASSSG
EFTLWNGTGFNFETIMQAHDSAIRALAYSHSDDWLVSADHDGMIKYWQPNFNNLESFRAH
QDPVRDLAFSPNDTKFVTASDDSTLKIFDFAAAASEQTLTGHGWDAKSCDWHPTKGLIVS
GSKDHLVKLWDPRTGRCLTTLHGHKNTITKTSFEKVRGQCLATSARDQTARVFDLRMMRD
IVLLRGHEKDISTLTWHPIHPNLLSTGGAEGSLFHYLLDEPNTPPGHAPSIAVYDSPDPQ
SCPAQTIYPAHKIPYAHDFAIWSLDWHPLGHILASGSNDRITRFWTRSRPGETEFNDRYH
IGEAAAEAQGTWDRRGNRHMRQVEEEQEMEDEMDGLVDQKMPIKPPGIPGFGNIPGLPMQ
GVSALPGLGPPPPPGLAGRGAGVPPNLPFPLPGLPPPPLPGIDPKNPPDFAAIAEMMKKA
GIPPPPPPSSGGIPPPPPGMLPPGLIPPPGFPLPPGFPPPPPHLAAQAAAQNFGDGGHGD
REAGGRRRAPLPSQEESLRMEQNRGHYTRAR
NT seq 1896 nt   +upstreamnt  +downstreamnt
atggcgagaagggctttggcgggggtggccacgatggtcctatgccaccgagagctcgag
gtcgacctaacagaaccttccttcccccccccaggtcctgtaaccgactatggtgccacc
atcgtccactggatgagaaaccgccggccgggataccagggttcctaccgtggtgaggtt
gagagaccgagtgctagctatattgtcgatatgcttccacccattgccagaagatcgaat
ccagctgacacggtgccaaccaagcaccttcactcctccctcaacaagatcaaacatccc
gtcaacgtggtgagatggacgccagaaggcagaagacttttgacggcctctagcagtggc
gagttcacgctttggaatggcacaggtttcaacttcgaaactatcatgcaggctcacgat
tctgctatccgcgccttagcctactcccatagtgacgattggcttgtgtctgctgatcac
gacggcatgatcaaatattggcaacccaatttcaacaacttggagagtttccgcgctcat
caagatcctgttcgagatcttgcctttagcccgaacgacaccaagtttgtgaccgcctcg
gacgactctactctcaagattttcgactttgctgctgccgcttctgaacagacactgacg
ggtcatggatgggatgcaaagagttgcgactggcatcccacaaagggactgattgtgtcg
ggatcaaaggaccatctcgtcaagctctgggatccaagaacaggtcgctgcctgaccaca
ctccatggccacaagaacaccatcacaaagacttcctttgagaaggtacgaggccaatgc
ctcgccacgtctgcccgagaccaaactgctcgtgtgttcgacctgcgcatgatgagagat
attgtcctcctccgcggtcacgaaaaggatatctccaccctgacatggcatcccatccac
ccaaatcttcttagcactggcggcgccgaaggttcgctctttcactacttgcttgacgag
cccaacacccctccgggccacgcgccctccattgctgtatacgacagccccgatcctcag
tcatgccctgcccagactatttaccctgcccacaagataccctatgctcacgactttgct
atctggtcgctcgactggcatccgcttggccacattctagcatcgggctccaacgaccgc
atcacccgtttttggacccgctctcgaccgggcgaaactgaattcaatgatcgctaccac
attggcgaagccgccgctgaggcccaaggcacatgggatcgccgtgggaaccgtcatatg
cgtcaagtcgaagaagaacaagaaatggaggatgagatggacggccttgtcgaccaaaag
atgcccatcaagccacctggcattcctgggtttggcaacattccaggcctgcccatgcaa
ggagtttcagctctgcccggcctaggtcctccaccgccgcctggtcttgccggaagaggt
gccggtgttccacccaacttacccttcccgttaccaggactcccaccgcctccgctcccc
ggaatcgatcccaagaatcctcccgatttcgctgccattgccgagatgatgaaaaaggct
ggtattccaccgccaccacctcccagctcgggtggtatcccgcctcccccgccagggatg
cttccgcctggcctcattccgcctccagggtttcctctgccacctggtttccctcctccg
ccgccccatctggctgctcaagctgcggcccagaattttggtgacggcggtcatggggat
cgtgaggcgggcggccgaagacgagcaccgcttcctagtcaggaggagagtctgcggatg
gaacagaaccgggggcattataccagagcgagatag

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