Podospora pseudocomata: QC762_710990
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Entry
QC762_710990 CDS
T09797
Symbol
PUB1
Name
(RefSeq) E3 ubiquitin-protein ligase pub1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
ppsd
Podospora pseudocomata
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsd03019
]
QC762_710990 (PUB1)
03041 Spliceosome [BR:
ppsd03041
]
QC762_710990 (PUB1)
Messenger RNA biogenesis [BR:
ppsd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
QC762_710990 (PUB1)
Spliceosome [BR:
ppsd03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
QC762_710990 (PUB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
RRM_10
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
87913856
NCBI-ProteinID:
XP_062739803
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All DBs
Position
7:complement(3309962..3313969)
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AA seq
486 aa
AA seq
DB search
MADNGSASASGQLPPPPQANAGAPGYENGQGNGNPAHMPPPPLHIPQNTNPIPTAITSPL
GGGDKSGIISPTSGGPFARRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQNVKII
PDKNAKGYNYGFVEYDDPGSAERAMQTLNGRRVHQAEIRVNWAYQSNNTNKEDTSNHFHI
FVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSMD
GEWLGSRAIRCNWANQKGQPSIAQQQAMQQMGMTPTTPYGHHHFPTHGVHSYDMIVNQTP
AWQTTCYVGNLTPYTTQNDLVPLFQNFGFVVESRFQADRGFAFIKMDTHENAAMAICQLN
GYNVNGRPLKCSWGKDKTPQAQQAQFDPNQAYSPQSAQTPAYPGTPSTYFNQYGGNFGPG
QQAAYTGAQAQSPAAYGGGPMGYSGPPSAGGYGRGQGPNPNNAQQWNQGQAPPQNFGNNG
YSGYQG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaacggttccgcttcggcctccggccaactcccccctcctccccaggccaac
gccggcgcgcccggctacgagaacggccagggcaatggcaacccggcgcacatgcccccg
ccgcccctccatatcccgcagaacaccaaccctatcccaactgcgatcacatcgccgttg
ggcggcggcgacaagagtgggatcatctctcccacgagcggtggcccattcgcccgtcgt
gccgctcccgagcccaacaagcgggccctttacgtgggtggcctcgacccccgcgtcacc
gaagacgttctccgtcaaatcttcgagaccactggacacgtccagaacgtcaagatcatc
ccggacaagaacgcgaagggttacaattatggcttcgttgaatatgatgatcccggctcg
gctgagcgtgccatgcagactttgaacggccgtcgtgttcaccaggctgaaattcgtgtc
aactgggcttatcagtcgaacaacacgaacaaggaggacacttcgaaccacttccacatc
tttgtcggcgatctttctaacgaggtcaacgatgaggtccttcttcaggccttttccgct
ttcggctcggtttccgaggctcgtgtcatgtgggatatgaaaactggccgttctcgcggt
tatggcttcgttgctttccgcgaccgtcccgaggctgagaaggctttgagctccatggac
ggcgagtggctcggttctcgcgccatccgttgcaactgggccaaccagaagggccagcct
tcgattgcccagcagcaggccatgcagcagatgggcatgaccccgacgaccccctacggc
catcatcacttccccacccacggcgttcactcttacgatatgattgtcaatcagactccg
gcctggcagacaacttgctacgtgggcaacttgaccccgtacaccacccagaacgacttg
gtcccgcttttccagaactttggttttgtggttgagtcccgcttccaggcggaccgtggt
tttgccttcatcaagatggacacccatgagaatgcggccatggccatttgccagttgaac
ggctacaatgtcaatggtcgccccctcaagtgcagctggggcaaggacaagactcctcag
gctcagcaggctcagttcgatcccaaccaggcgtacagccctcagagcgcacagaccccc
gcttatcctggaactccttctacctactttaaccagtacggtggcaactttggtcctggt
cagcaggccgcttacactggagctcaggctcagtctcctgctgcgtacggcggtggcccc
atgggctacagtggtccccccagtgctggcggttacgggcgcggtcagggtccgaacccg
aacaatgctcagcagtggaaccagggccaggccccgcctcagaactttggcaacaacggc
tattctggttaccagggttag
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