Ectopseudomonas oleovorans: BN5_0230
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Entry
BN5_0230 CDS
T03772
Symbol
rho
Name
(GenBank) Transcription termination factor rho
KO
K03628
transcription termination factor Rho
Organism
ppse
Ectopseudomonas oleovorans
Pathway
ppse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN5_0230 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppse03021
]
BN5_0230 (rho)
03019 Messenger RNA biogenesis [BR:
ppse03019
]
BN5_0230 (rho)
Transcription machinery [BR:
ppse03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BN5_0230 (rho)
Messenger RNA biogenesis [BR:
ppse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BN5_0230 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
NACHT
S1CSD-TOTE-2
Mor
Motif
Other DBs
NCBI-ProteinID:
CDM38844
UniProt:
W6RAI7
LinkDB
All DBs
Position
232457..233716
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPIAELLDMAEQMGLENMARSRKQDIIFALLKKHAKSGEEISGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDSIN
FDRPENAKNKILFENLTPLFPNKRLTMEAGNGSTEDITGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELILDRRVSEKRVFPAINI
NKSGTRREELLTGEEELSRMWILRKLLHPMDEIAAIEFLIDKLKATKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgaccgaactcaagcaaaagccgattgccgaactgctggacatggccgaacaa
atgggcctggaaaacatggctcgttcgcgcaagcaggacatcatcttcgccctgctgaaa
aagcatgccaaaagcggcgaggaaatttccggtgacggcgtgctggagatcctccaggac
ggtttcggcttcctgcgcagcgccgactcttcctacctggccggccctgacgacatctac
gtctcgcccagccagatccgccgtttcaacctgcgtaccggtgacaccatcgtcggcaag
atccgcccgccgaaggaaggcgagcgttacttcgccctgctcaaggtcgacagcatcaac
ttcgaccgtccggaaaacgccaagaacaagatcctgttcgaaaacctgacgccgctgttc
cccaacaagcgcctgaccatggaagccggtaacggctctaccgaggacatcaccggccgt
gtgatcgacctctgcgcgccgattggcaagggccagcgcggcctgatcgtcgccccgccg
aaagcgggcaagaccatcatgctgcagaacatcgcctcgaacatcacccgcaacaacccc
gagtgccacctgatcgttctgctgatcgacgagcgcccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggtcgcctcgaccttcgacgagccgccgacccgccacgtg
caggtcgccgaaatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggatgtg
gtcatcctgctcgactccatcacccgtctggcgcgtgcctacaacaccgtgatcccgagc
tccggcaaggtcctgactggtggtgtcgacgcccacgccctggagaagcccaagcgcttc
ttcggcgccgcgcgtaacatcgaagaaggcggctcgctgaccatcatcgctaccgcgctg
gtggaaaccggctcgaagatggacgaagtgatctacgaggaattcaaaggcaccggcaac
atggagctgatcctcgatcgccgtgtttccgagaagcgcgtgttcccggccatcaacatc
aacaagtcgggcactcgtcgtgaagagctgctgaccggtgaagaagagctgtcgcgcatg
tggatcctgcgcaagctgctgcacccgatggacgaaatcgccgccatcgagttcctgatc
gacaagctgaaagcgaccaagaccaacgacgagttcttcctgtcgatgaagcgcaaataa
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