Ectopseudomonas oleovorans: BN5_0521
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Entry
BN5_0521 CDS
T03772
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
ppse
Ectopseudomonas oleovorans
Pathway
ppse02024
Quorum sensing
ppse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN5_0521 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
BN5_0521 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppse03019
]
BN5_0521 (hfq)
03036 Chromosome and associated proteins [BR:
ppse03036
]
BN5_0521 (hfq)
Messenger RNA biogenesis [BR:
ppse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
BN5_0521 (hfq)
Chromosome and associated proteins [BR:
ppse03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
BN5_0521 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Gag_p24_C
Motif
Other DBs
NCBI-ProteinID:
CDM39135
UniProt:
W6QQA6
LinkDB
All DBs
Position
568267..568527
Genome browser
AA seq
86 aa
AA seq
DB search
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVRLPSAGDAEQADGEPGNA
NT seq
261 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagggcattcgctacaagacccttacctgaataccctgcgtaaggaacgcgtc
cctgtttccatctatctggtcaacggcatcaagctgcaaggccagatcgaatccttcgac
cagtttgtcattctgctgaagaataccgtcagccagatggtctacaaacacgccatttcc
accgtcgtgcctagccgtccggtacgcctgccgagtgctggcgatgccgagcaggcagat
ggcgagccaggtaacgcctga
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