KEGG   Ectopseudomonas oleovorans: BN5_0521
Entry
BN5_0521          CDS       T03772                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
ppse  Ectopseudomonas oleovorans
Pathway
ppse02024  Quorum sensing
ppse03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppse00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BN5_0521 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BN5_0521 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppse03019]
    BN5_0521 (hfq)
   03036 Chromosome and associated proteins [BR:ppse03036]
    BN5_0521 (hfq)
Messenger RNA biogenesis [BR:ppse03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BN5_0521 (hfq)
Chromosome and associated proteins [BR:ppse03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BN5_0521 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1 Gag_p24_C
Other DBs
NCBI-ProteinID: CDM39135
UniProt: W6QQA6
LinkDB
Position
568267..568527
AA seq 86 aa
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVRLPSAGDAEQADGEPGNA
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacctgaataccctgcgtaaggaacgcgtc
cctgtttccatctatctggtcaacggcatcaagctgcaaggccagatcgaatccttcgac
cagtttgtcattctgctgaagaataccgtcagccagatggtctacaaacacgccatttcc
accgtcgtgcctagccgtccggtacgcctgccgagtgctggcgatgccgagcaggcagat
ggcgagccaggtaacgcctga

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