Ectopseudomonas oleovorans: BN5_0533
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Entry
BN5_0533 CDS
T03772
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ppse
Ectopseudomonas oleovorans
Pathway
ppse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN5_0533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppse03019
]
BN5_0533
03016 Transfer RNA biogenesis [BR:
ppse03016
]
BN5_0533
Enzymes [BR:
ppse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BN5_0533
Messenger RNA biogenesis [BR:
ppse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN5_0533
Transfer RNA biogenesis [BR:
ppse03016
]
Prokaryotic type
tRNA degradation factors
BN5_0533
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
AbiEi_4
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
CDM39145
UniProt:
W6QQB6
LinkDB
All DBs
Position
579647..582142
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AA seq
831 aa
AA seq
DB search
MADWQSLDPEAAREAEKYDNPIPSRELILAHLAERGSPASREQLVEEFGLDTEDQLEALR
RRLRAMERDGQLIYTRRGTYAPVDKLDLICGRISGHRDGFGFLVPDDGSDDLFLSPAQMR
LVFDGDRALVRVAGLDRRGRREGSIVEVISRAHESIVGRYYEENGIGFVVADNPKIQQEV
LVTPGRTAGARIGQFVEIKITHWPTQRFQPQGDIVEVIGNYMAPGMEIDVALRSYDIPHV
WPEAVVKEARKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEKNSSRWKLFS
GGWKLYVAIADVSHYVKVGSALDAEAVVRGNSVYFPERVVPMLPEELSNGLCSLNPHVDR
LAMVCEMTMSKSGQMVDYKFYEAVIHSHARLTYNKVSLMLEDPKSSEGKSLRSEYKEVLP
HLNQLYALYQVLAAARHERGAIDFETQETRIIFGEGRKIAEIRPTQRNDAHKLIEECMLA
ANVATARFMQDHQIPSLYRVHGGPPPERLEKLNAFLGELGLSLQRGKSKDGPSPKDYQRL
LESIRERPDYHLIQTVMLRSLSQAVYSAQNEGHFGLNYEAYTHFTSPIRRYPDLLAHRAI
RSVIRSKRDTKHVERAGAAVMPKARIYPYDEATLEKLGEQCSMTERRADEATRDVVNWLK
CEFMQDRVGETFPGVITAVTGFGIFVELRDIYVEGLVHVTALPADYYHFDPVHHRLSGER
SGRSFRLGDSVEVKVMRVDLDERKIEFELSQAAEREAIGRGSRAGKAPSMGNTDVQKSRD
VKKALLAGAKAGKGAAGKSASKPAGGARKGSGRSDSAPPAAGKPRKRKAKS
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaatccctcgatcccgaggccgcccgcgaggcggaaaaatacgacaac
cccatccccagtcgcgaactgatcctggcccatctggccgagcgaggttcgcccgccagt
cgcgagcagctggtcgaagagttcggtctcgataccgaggaccagcttgaagcgctgcgc
cgccgcctgcgcgccatggagcgcgatggtcagctcatctatacccgccgcggcacctac
gcgccggtggacaagctcgatctgatctgcgggcgcattagcggtcaccgcgacggcttc
ggcttcctcgtgccggatgacggcagtgatgaccttttcctcagtccggcgcagatgcgt
ctggtgttcgatggtgaccgtgccctggtgcgcgtggccggtctcgaccggcgcggccgt
cgcgaaggcagcatcgtcgaggtgatcagccgtgctcacgagagcatcgtcggccgttac
tacgaagagaacggcatcggcttcgtcgttgccgacaatcccaagatccagcaggaagtg
ctggtcaccccagggcgcactgccggtgcgcgcattggtcagttcgtcgagatcaagatc
actcactggcctacgcagcgtttccagccgcagggcgacatcgtcgaggtaatcggcaac
tacatggcgccgggcatggagatcgacgtggcgctgcgcagctacgacatcccgcacgtc
tggcccgaggcggtagtcaaggaagcgcgcaagctcaagcctgaggtggaggagaaggac
aaggagaagcgcatcgacttgcgccatctgcctttcgtcaccatcgatggtgaagacgcc
cgcgacttcgacgatgcggtctactgcgagaagaacagcagccgttggaagttgttctcc
ggtggctggaaactctacgtggccatcgccgacgtctcgcactacgtcaaggtcggctcg
gcgctggatgccgaggcggtcgtgcgcggcaactcggtgtatttccccgagcgcgtcgta
ccgatgctgccggaggaactgtccaacggcctgtgctcgctcaacccgcatgtcgatcgc
cttgccatggtctgcgaaatgaccatgtccaagagcggccagatggtcgactacaagttc
tacgaggcggtgatccactcccatgcgcgcctgacctacaacaaggtcagcctgatgctg
gaagatcccaagagcagcgagggcaagtccctgcgcagcgagtacaaggaggtcctgccg
cacctcaatcagctctacgcgctgtatcaggtactggccgccgctcgtcacgagcgcggc
gccatcgacttcgagacccaggaaacccgcatcatcttcggcgaagggcgcaagatcgcg
gagatccgcccgacccagcgcaacgatgcgcacaaactgatcgaggagtgcatgctggcc
gccaacgtggccaccgcgcgcttcatgcaggatcaccagatcccgtcactgtatcgcgtg
cacggtggcccgccgccggagcgcctggagaaactcaacgccttcctcggtgagctgggg
ttgtcgctgcagcgtggcaagtccaaggatggtccgtcacccaaggactatcagcgcctg
ctggaaagcatccgcgagcgcccggactatcacctgatccagaccgtgatgctgcgttcg
ctgagtcaggcggtgtacagcgcgcagaacgaagggcacttcggcctcaattacgaggct
tacactcacttcacctcgccgatccgtcgctatcccgacctgttggcgcatcgtgccatt
cgcagcgtgatccgttccaagcgcgacaccaagcacgtggagcgtgccggtgcggcagtc
atgcccaaggcgcgtatctatccgtacgacgaagcgaccctggaaaagctcggcgagcag
tgctcgatgaccgagcgccgtgccgacgaagcgacccgcgacgtggtcaactggctcaag
tgcgagttcatgcaggatcgtgtcggtgagaccttccccggtgtgatcactgccgtgacc
ggtttcggtattttcgtcgagctgcgcgacatatacgtcgagggcctggtgcatgtgacc
gcgctgccggccgactactaccacttcgacccggttcaccatcgtctgtccggcgagcgc
agtgggcgcagcttccgcttgggcgatagcgtcgaggtcaaggtcatgcgcgtcgatctc
gacgagcgcaagattgaattcgaactgtcccaggccgctgagcgtgaggccattggtcgt
ggcagtcgcgctggcaaggcgccgagcatgggcaataccgacgtgcagaagagccgagac
gtgaagaaggcgctgctggccggcgccaaggctggcaagggcgctgccggcaagtcggcg
agcaagccggccggtggtgcgcgcaaaggctccgggcgtagtgacagtgccccgccagct
gccggaaagccgcgcaagcgtaaggccaagtcatga
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