Ectopseudomonas oleovorans: BN5_1447
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Entry
BN5_1447 CDS
T03772
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppse
Ectopseudomonas oleovorans
Pathway
ppse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN5_1447 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppse03019
]
BN5_1447 (rne)
03009 Ribosome biogenesis [BR:
ppse03009
]
BN5_1447 (rne)
Enzymes [BR:
ppse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BN5_1447 (rne)
Messenger RNA biogenesis [BR:
ppse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN5_1447 (rne)
Ribosome biogenesis [BR:
ppse03009
]
Prokaryotic type
rRNA processing factors
BN5_1447 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
CDM40046
UniProt:
W6R0U9
LinkDB
All DBs
Position
complement(1543177..1546245)
Genome browser
AA seq
1022 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF
GSERHGFLPLKEISREYFSKSPEGGRVNIKDVLKEGQEVIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSSEEMQ
WDLDYLLQLWSAIKEASTSRPAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAQEEAL
SFIQQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSI
DINSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEK
VREALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLA
ILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPH
FEVQRLRDDSPEALSGQTSYEIAATAETEETAAQPAAATRTLVRQEAAIKAAPRSSAPVA
AEPQAPLAPTKAPEPSLFKGLVKSLVSLFAGKEEEAQPAAVEKKSNERPPREERRNGRQQ
SRNRGGRRDDERKPREERAPREERQAREPREERQPREERQPREERAPREPREGQENRRER
KPREERAPREERVRELREPIAADTDADAGNEQREERAERQPRGERQERQRQPREERQPRA
EQTEALQDEAPPNEEQLQDDEQDSNDGERPRRRSRGQRRRSNRRERQRDADGNLIESAEN
SEAAGNDAQTVTPVAVATAAAVVAESVDSSEAVASEAPVSEAPAVEAPSVQVEEAPAAQP
VEAQAEAAVSEVAEAAPVAEKAVEAEPAAVETPAAVEAPVAEPVAQAEPTVEVAQEPAPA
PVEQAPAAAAVPANATGRAPNDPREVRRRQREAERLAREAAQAAAAAPAVEAAPVVDAAP
VAEASAPAEAEAAVVETAPVVEPVAEAEATSVVSEQRVSDAVEQAQPEEETPADKEEVKP
QA
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaattaacgcgactcagcctgaagagttgcgtgttgccctggtagat
ggccaaaaactctacgacctggacatcgagtccggcgcccgtgaacaaaaaaaggccaac
atctacaaaggccgcatcacccgcgttgaacccagcctcgaagccgccttcgtcgacttc
ggctccgaacgccacggcttcctccccctcaaagaaatctcccgcgaatatttctccaag
tctcctgaaggcggccgcgtcaacatcaaggacgtgctcaaggaaggccaggaagtcatc
gtccaggtcgagaaagaagaacgcggcaacaagggcgcagccctgaccacgttcatcagc
ctggccggccgttacctggtgctgatgccgaataacccgcgtgccggtggcatcagccgc
cgtatcgaaggcgaagagcgcaacgaattgcgtgaagcgctgaatggcctcaacgctccg
gccgacatgggtctgatcgtgcgcactgccggcctgggccgctccagcgaagaaatgcag
tgggacctcgactacctgctgcaactgtggagcgccatcaaggaagcctccaccagccgc
cctgccccgttcctgatctaccaggaatccaacgtcatcatccgcgccatccgcgactac
ctgcgccaggacatcggcgaagtgctggtcgacagcgtcgaagcccaggaagaagcgctg
tcctttatccagcaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagc
gtgccgctgttcaaccgcttccagatcgaaagccagatcgaaaccgccttccagcgtgaa
gtgaaactgccgtccggtggttccatcgtcatcgacccgaccgaagccctggtttccatc
gacatcaactcggcgcgcgccaccaagggcagcgacatcgaggaaaccgcgctgcagacc
aacctggaagcggccgaggaaatcgcccgccagctgcgcctgcgcgacatcggcggcctg
atcgtcatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtcgaagagaag
gtgcgtgaagccctggaagccgaccgcgcccgtgtacaggtcggccgcatctcgcgcttc
ggcctgctggaaatgtcccgtcagcgcctgcgtccgtccctcggcgagaccagcggcatc
gtctgcccgcgttgcaacggtcaaggcatcatccgcgacgtcgaatccctgtcgctggcc
atcctgcgcctgatcgaagaagaagcgctgaaggatcgcaccgccgaagtccgcgctcag
gtaccgatcccggtcgccgccttcctgctcaacgagaagcgcaactcgatcaccaagatc
gaactgcgcacccgtgcgcgtatcgtgatcctgccgaacgatcacctggaaaccccgcat
ttcgaagtgcaacgcctgcgtgacgacagcccggaagccctgagcggccagaccagctac
gaaatcgccgccactgcggaaaccgaagaaaccgccgcccagccggccgccgccacgcgc
actctggttcgccaggaagctgcgatcaaggccgcaccgcgcagcagcgccccggtcgct
gccgagcctcaagcaccactggctccgaccaaggcgcctgaaccgagcctgttcaagggc
ctggtgaagtctctggtcagcctgttcgccggcaaggaagaagaagcccagcccgcagca
gtcgagaagaagagcaacgagcgtccgccgcgcgaagagcgccgcaacggtcgtcagcag
agccgtaaccgtggcggtcgccgcgatgacgagcgcaaacctcgtgaagagcgcgccccg
cgtgaagaacgtcaggcccgtgaaccgcgtgaagaacgccaacctcgcgaagagcgtcaa
ccgcgtgaagagcgcgccccacgtgagccgcgcgaaggtcaggaaaatcgccgtgagcgc
aagccgcgcgaagaacgcgccccgcgtgaagagcgcgtgcgtgaactgcgtgaacctatc
gcagccgataccgatgccgatgctggtaacgagcaacgcgaagagcgtgccgagcgccag
ccgcgtggtgaacgtcaggagcgtcagcgtcaaccgcgtgaagagcgtcagccgcgtgcc
gagcaaaccgaggccctgcaggacgaagcaccgccgaacgaagagcaactgcaggacgac
gagcaggacagcaacgatggcgagcgcccacgtcgccgttcccgcggtcagcgtcgtcgc
agcaatcgtcgcgaacgtcagcgtgatgccgatggcaacctgatcgagagcgccgagaac
agcgaagctgccggtaacgacgctcagaccgtcaccccggtcgccgtggctactgccgct
gccgtggttgcagaaagcgtcgacagcagcgaagccgttgccagcgaggctccggtcagc
gaagccccggccgtcgaagccccgtctgttcaggttgaagaagcccctgctgctcaaccg
gtcgaggcgcaagccgaggctgctgtgagtgaagtggctgaagctgctccggtcgcagag
aaagcggttgaggcagaaccggccgcagtcgaaacccctgctgccgttgaagcgccagtt
gccgagccggtcgctcaagctgagccgactgtcgaagttgcccaggagcctgctccggca
ccggtcgagcaagcacctgctgccgcagcggttccggccaatgccactggccgcgcaccg
aacgacccgcgtgaagtgcgtcgtcgtcagcgtgaagctgagcgcctggcgcgcgaagct
gcacaggccgccgctgcagccccggctgtagaagctgccccagtagtcgacgccgctccg
gtcgctgaagcaagcgccccggcagaagccgaagccgctgtagtcgaaacagctcctgta
gtcgagccggtcgctgaagccgaagccacctctgtcgtaagcgagcaacgcgtgagcgat
gcggtagagcaagcgcagccggaagaagaaacgccagccgacaaggaggaggtcaagccc
caggcttga
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