Ectopseudomonas oleovorans: BN5_2024
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Entry
BN5_2024 CDS
T03772
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppse
Ectopseudomonas oleovorans
Pathway
ppse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN5_2024 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppse03019
]
BN5_2024 (deaD)
03009 Ribosome biogenesis [BR:
ppse03009
]
BN5_2024 (deaD)
Enzymes [BR:
ppse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BN5_2024 (deaD)
Messenger RNA biogenesis [BR:
ppse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN5_2024 (deaD)
Ribosome biogenesis [BR:
ppse03009
]
Prokaryotic type
rRNA helicases
BN5_2024 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
TrkA_N
HEM4
Motif
Other DBs
NCBI-ProteinID:
CDM40596
UniProt:
W6R2H7
LinkDB
All DBs
Position
2142536..2144218
Genome browser
AA seq
560 aa
AA seq
DB search
MTQEIGGFAALGLHPNILAALTAVGYEEPSPIQSQAIPVILAGQDMIGQAQTGTGKTAAF
ALPILSKIDPTKREPQALILAPTRELALQVATAFETYSKQMPGLNVVAVYGGAPMGPQLK
AIRQGAQVIVATPGRLVDHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEVIFEAMPES
RQSVLFSATLPHSIRAIAEKHLREPQHVKIAAKTQTVSRIEQAHLMIHADQKTNAVLRLL
EVEDFDALIAFVRTKQATLDLAAALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTGQKVGEVKLPNAQQVLDARIKKLTSSLAPLVADAEASHGDLLDRLTADIGCSPRAL
AAALLKKATNGQALDLATVEREQPLVPGVGGAPRERRERDGERGGERGEYRERRAPVPLT
EGRVRCRTALGTRDGIAAKNLLGAILNEGGLAREAIGRIQIRETFSLVELPEDGLDRLLG
KLKDTRVAGKALKLRRYRED
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgcgctcggacttcaccccaatattctcgccgct
ctgaccgccgtcggttacgaagagccgtccccaatccagtcgcaggccattccggtgatt
ctcgccggccaggacatgatcggccaggcccaaaccggcactggcaagaccgcagccttc
gcgttgccgatcctgtcaaaaatcgacccgaccaagcgtgaaccacaggcgctgattctg
gcgccgacccgcgagctggccctgcaggtcgctaccgccttcgaaacctattccaagcag
atgcctggcctcaatgtggtcgccgtctacggcggcgcgccgatgggcccgcagctcaag
gccattcgccagggcgctcaggtcatcgtcgccaccccgggtcgtctggtcgaccacctg
cgtcgtgacgagaaagtgctgtcgaccattcagcatctggtactcgacgaagcggacgaa
atgctcaagctgggcttcatggatgacctcgaggtgatcttcgaagccatgccggaaagc
cgccagagcgtgctgttctccgccacgctgccgcattcgatccgtgccatcgccgaaaag
cacctgcgcgaaccgcaacacgtcaagatcgcggccaagacccagaccgtctcgcgtatc
gagcaggcgcacctgatgatccatgccgatcagaagaccaacgccgtgctgcgcctgctg
gaagtcgaggattttgacgcgctgatcgctttcgttcgcaccaagcaggccactctggac
ctggctgctgccctggaagccaaaggcttcaaggccgctgcgctgaacggcgacattgcc
cagaaccagcgtgagcgcgtgatcgagtcgctcaaggatggtcgtctggacatcgtcgtc
gcgactgacgttgctgctcgtggtatcgacgtaccgcgcatcacccacgtgttcaacgtc
gacatgccgtacgacccggagtcctacgtacaccgtatcggccgtaccggccgcgccggt
cgcgatggccgtgcgctgctgctggtaaccccgcgtgagcgccgcatgctgcaggtgatc
gagcgtgtcaccgggcagaaggtcggcgaggtcaagctgccgaacgcccagcaggtgctc
gatgcgcgcatcaagaagctcaccagcagcctggcgccgctggtggctgatgccgaagcc
agccatggcgatctgctcgaccgcctgaccgccgatatcggctgcagcccacgtgccctg
gccgctgcgctgctgaagaaggccactaacggccaggccctggatctggccactgtcgag
cgcgagcagccgctggtgccgggcgttggtggtgctccgcgtgagcgtcgtgaacgtgac
ggcgagcgtggtggtgagcgcggcgaatatcgcgagcgccgtgcgccggtaccgctgacc
gaaggtcgcgtgcgttgccgcaccgccctgggcacgcgcgacggcattgctgcgaagaac
ctgctgggcgctatcctaaatgagggcggtctggctcgtgaagccatcggccgaatccag
atccgtgagaccttcagcctggtcgagctgccggaagatggcctggatcgtctgctcggc
aagttgaaagacacccgcgtcgctggtaaggcgctgaagctgcgtcgctatcgcgaggat
tga
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