Ectopseudomonas oleovorans: BN5_3510
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Entry
BN5_3510 CDS
T03772
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ppse
Ectopseudomonas oleovorans
Pathway
ppse02020
Two-component system
ppse02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppse00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BN5_3510
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BN5_3510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppse03021
]
BN5_3510
Transcription machinery [BR:
ppse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BN5_3510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
CCDC14
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
CDM42062
UniProt:
W6R023
LinkDB
All DBs
Position
3643633..3645126
Genome browser
AA seq
497 aa
AA seq
DB search
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNSD
PMADGAESATPNPNKEDSYQETTPTVDNLEEGEWGERIPNELPVDTAWEDIYQTSASSLP
SNDDDEWDFTTRTSSGESLHSHLLWQLNLAPMSDKDRLIAATLIDCINNDGYLEETLEEV
TESFDPELDVELDEVEVVLHRIQQFEPAGIGARDLRECLLLQLRQLPANTPWLNETQRVV
GDYLELLGSRDYAQLMRRTKLKEDELRQVIDLIQRLNPRPGSQIESSEPEYVVPDVIVRK
HNERWLVELNQEAMPRLRVNPQYAGFVKRADSSADNTFMRNQLQEARWFIKSLQSRNETL
MKVATQIVEHQRGFLDYGDETMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK
YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENTKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLM
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctagtcctcaagatgggccagcagctgacgatgaccccgcagctgcaa
caggctatccgcctcctccaattgtctaccctggacctgcaacaggaaatacaggaggca
ctggaatccaatcccatgctcgagcgccaggaagacggcgacgacttcgacaacagcgat
ccaatggccgatggcgccgaaagcgccactccgaacccgaacaaggaggacagctaccag
gaaaccacccccacggtggacaacctggaagaaggcgagtggggcgagcgcatccccaac
gagctgccggtcgataccgcctgggaagacatctaccagaccagcgccagcagcctgccc
agcaacgacgatgacgagtgggacttcaccacccgcacttccagtggcgagagcctgcac
agccatctgctctggcaactgaatctggcccccatgtcggacaaggaccgcctgatcgcc
gccaccctgatcgactgcatcaataacgacggttacctcgaggaaacgctcgaggaagtg
accgaatccttcgaccccgagctggatgtcgaactggacgaagtggaagtggtgctgcac
cgcatccagcagttcgaaccggccggtatcggcgcccgcgacctgcgcgagtgtctgctg
ctgcaactgcgtcagttgcctgccaacaccccctggctgaacgaaacccagcgcgtggtc
ggcgactatctggagctgctcggcagccgcgattacgcccagctgatgcgtcgcaccaag
ctcaaggaagacgaactgcgccaggtcatcgacctgatccagcgcctgaatccgcgtccg
ggttcgcagatcgagtccagcgaaccggaatacgtcgtgcccgacgttatcgtgcgcaag
cataacgaacgctggctggtggagctgaaccaggaagccatgccgcgcctgagggtcaac
ccgcagtatgccggcttcgtcaaacgcgcagactccagcgccgataacaccttcatgcgc
aaccagttgcaggaggcccgctggttcatcaaaagcctgcagagccgcaacgaaacgctg
atgaaggtggccacgcagatcgttgagcaccagcgtggcttcctcgactacggcgacgag
acgatgaagcctctggtgctgcacgacatcgccgaagccgtgggtatgcacgagtcgacg
atttcacgcgttaccacgcagaaattcatgcacaccccgcgtggcatttacgagctgaaa
tatttcttctccagccacgtcagcacctccgaaggcggcgaatgctcgtccaccgcgatc
cgcgcgatcatcaaaaaactggttgcagcagaaaacacgaaaaagccgttgagcgacagc
aagatcgctggtttactggaggcacaaggcatccaagtcgcccgtcggacggtcgccaag
tatcgcgagtccctcggcatagcgccctcgagtgagcgcaagcgactgatgtag
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