Ectopseudomonas oleovorans: BN5_3702
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Entry
BN5_3702 CDS
T03772
Symbol
rpoC
Name
(GenBank) RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppse
Ectopseudomonas oleovorans
Pathway
ppse03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppse00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BN5_3702 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppse03021
]
BN5_3702 (rpoC)
03400 DNA repair and recombination proteins [BR:
ppse03400
]
BN5_3702 (rpoC)
Enzymes [BR:
ppse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BN5_3702 (rpoC)
Transcription machinery [BR:
ppse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BN5_3702 (rpoC)
DNA repair and recombination proteins [BR:
ppse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BN5_3702 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
Peptidase_M23
DUF3150
Motif
Other DBs
NCBI-ProteinID:
CDM42254
UniProt:
W6RKF8
LinkDB
All DBs
Position
complement(3818230..3822429)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQIEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLDHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFKDSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEARGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAVNAKGEGRVFADLQEVDRVFRAG
EASLHARVKVRINETIKEKDGSITKNTRIVDTTVGRALLFQIVPDGLSYDVVNQTMKKKA
ISKLINQCYRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEPVVDREGKTVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIAKDVFKPGTEDVIVPAGTLIDEQWVEFIELNSVDEVVVRSPITCETRFGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGAIRL
HNLKYVERVDGNLVAVSRSGELAVADEFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGIVTFVGMEEGITIKRQTDELTGLTNIEVLDPKDRPAAGKDIRPAIKM
VDANGKELLLPGTDVPAQYFLPANALVGVADGAQIAVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEISGTISFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEITESGDSSFIKGDQMELTQVLGENERLAEEDKFVAKYTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRKRDADKPVR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcagatcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcctcaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagtagccctggccaaggttcgtcgtgag
cgcatggcgcacatcgagctggcctcgccggttgcccacatctggttcctcaagtccctg
ccgagccgtatcggcctgctgatggacatgaccctgcgtgatatcgaacgcgtgctctac
ttcgagagctacgtcgttatcgatccgggcatgaccacgctggagaagggccagctgctg
aacgacgagcagtacttcgaagccctcgaagagttcggtgacgacttcgacgcgcgcatg
ggcgccgaggccgtgcgcgagctgctgcacgccatcgacctggatcacgagatcggccgc
ctgcgtgaagagattccgcagaccaactccgagaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagccttcaaggactccggcaacctgccggagtggatggtgctgacc
gttctgccggtgctgccgccggatctgcgtccgctggtaccgctggatggtggccgcttc
gccacgtccgatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtctcaag
cgcctgctcgacctgtccgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggttgacgccctgctcgacaacggccgtcgcggtcgcgccatcactggctcgaac
aagcgtccgctgaagtcgctggctgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacctgctcggtaagcgcgtggactactccggtcgttccgtgatcaccgtgggtccgacc
ctgcgcctgcaccagtgcggactgccgaagaagatggccctcgagctgttcaaaccgttc
attttcggcaagctggaagcccgtggtctggcgaccaccatcaaggctgcgaagaagatg
gtcgagcgcgagctgccggaagtgtgggacgttctcgctgaagttattcgcgaacacccc
gtcctgctcaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggta
ctgatcgaaggtaaagcgatccagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgtgcatgtgccgctgacgctggaagcccagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacatcctgtcgccggccaacggcgagccaatcatc
gtgccgtcgcaggacgtggtactgggtctgtactacatgacccgtgaagccgtgaacgcc
aagggcgaaggccgcgtattcgccgacctgcaggaagtcgaccgcgtgttccgcgccggc
gaagcgtccctgcacgcccgcgtgaaagtgcgtatcaacgaaaccatcaaagagaaagat
ggttcgatcaccaagaacacccgcatcgtcgacaccactgtcggccgcgcgctgctgttc
cagatcgtgccggatggcctgtcctatgacgtggtcaaccagacgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcactgttggcttgaaggacaccgtgatcttc
gccgaccagttgatgtacaccggtttcgcctactcgaccatctccggtgtgtcgatcggc
gtgaacgacttcgtcattcccgatgaaaaggcgcgcatcattgacgccgccaccgaggaa
gtgaaggaaatcgaatcgcagtacgcctccggcctggtgacccagggcgagaagtacaac
aaagtgattgacctgtggtcgaaggccaacgatgaagtctccaaggcgatgatggccaac
ctctcgaaagagccggttgtcgatcgcgaaggtaagaccgtcgagcaggaatccttcaac
tccatgtacatgatggccgactccggtgcgcgtggttccgctgcgcagatccgtcagctg
gccggtatgcgtggtctgatggccaagccggacggctccatcatcgaaacgccgatcacc
gcgaacttccgcgaaggtctgtcggttctgcagtacttcatctccacccacggtgctcgt
aaaggtctggcggataccgcactgaagaccgcgaactccggttacctgactcgtcgtctg
gtcgacgtggcgcaggatctggtggtgaccgagatcgattgcggtaccgagcacggtctg
ctgatgacgccgcacatcgaaggcggcgacgttgtcgagccgctgggtgagcgcgtactg
ggtcgagtgatcgccaaggacgtgttcaagcctggcaccgaggacgtcatcgttccggcc
ggcaccctgatcgacgagcagtgggtcgagttcatcgagcttaacagcgtcgacgaagtg
gtcgtgcgttcgccgatcacctgcgaaacccgcttcggcatctgcgccaagtgctacggc
cgcgatctggctcgtggtcaccaggtcaacatcggtgaggctgtcggcgttatcgctgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgct
gcaagccgtacttcggctgccgacagcgtccaggtgaagaacggtggtgcgatccgtctg
cacaacctgaagtacgtcgagcgcgtggatggcaatctggtggcggtttcccgttccggc
gagctggctgtggccgacgagttcgggcgcgagcgcgagcgctacaagctgccgtacggt
gccgtgatttcggtgaaggaaggcgacaaggtcgacgctggtgccatcgtcgccaagtgg
gacccgcacacccacccgatcgtgaccgaaatgaagggtatcgtgaccttcgtcggcatg
gaggagggcatcaccatcaagcgccagaccgacgaactcaccggtctgaccaacatcgag
gttctcgatccgaaggatcgtccggctgctggcaaggacattcgtccggccatcaagatg
gtcgacgccaacggcaaggaactgctgctgccgggtaccgacgttcccgcccagtacttc
ctgccagccaacgccctggtcggtgtggctgacggcgcgcagatcgcggtcggtgacgtt
atcgctcgtatcccgcaagagacctcgaagactcgcgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcccgtcgtccgaaggaagcttcgatcctggcggaaatcagc
ggtaccatctcgttcggtaaagagaccaagggcaagcgccgtctggtcatcaccccgacc
gatggcagcgatccgtacgaggagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgagcaagtgaaccgcggcgaagtcatctccgacggtccgagcgatccgcacgatatc
ctgcgtctgctgggtgtgagcgcgctggccaagtacatcgtcaacgagatccaggacgtt
taccgtctgcagggcgtgaagatcaacgacaagcacatcgagaccattctgcgtcagatg
ctgcgtaaggtcgaaatcaccgagtccggcgactcttccttcatcaagggcgaccagatg
gagctcacccaggttctgggcgagaacgagcgtctggccgaagaggacaaattcgtcgcc
aagtacacccgcgtactgctgggtatcaccaaggcgtcgctgtccaccgagtcgttcatc
tcggcagcgtccttccaggaaaccactcgcgtcctcaccgaggcagcggttactggcaag
cgcgactacctgcgtggtctgaaagagaacgtggtcgtgggtcgcctaatcccggccggt
accggtctggcctatcacagcgagcgcaagcgcaagcgtgatgccgacaagccggtgcgt
gtcagcgccagtgaggtggaagccgcactgaccgaagcgctgaattccagcggaaattga
DBGET
integrated database retrieval system
