Penicillium psychrofluorescens: 300788956
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Entry
300788956 CDS
T11417
Symbol
PFLUO_LOCUS3252
Name
(RefSeq) uncharacterized protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ppsf Penicillium psychrofluorescens
Pathway
ppsf03013
Nucleocytoplasmic transport
ppsf03015
mRNA surveillance pathway
ppsf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppsf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
300788956 (PFLUO_LOCUS3252)
09122 Translation
03013 Nucleocytoplasmic transport
300788956 (PFLUO_LOCUS3252)
03015 mRNA surveillance pathway
300788956 (PFLUO_LOCUS3252)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsf03019
]
300788956 (PFLUO_LOCUS3252)
03041 Spliceosome [BR:
ppsf03041
]
300788956 (PFLUO_LOCUS3252)
Enzymes [BR:
ppsf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
300788956 (PFLUO_LOCUS3252)
Messenger RNA biogenesis [BR:
ppsf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
300788956 (PFLUO_LOCUS3252)
Spliceosome [BR:
ppsf03041
]
Complex C
Other components
EJC/TREX
300788956 (PFLUO_LOCUS3252)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
300788956 (PFLUO_LOCUS3252)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Ned1_M
Motif
Other DBs
NCBI-GeneID:
300788956
NCBI-ProteinID:
XP_073637329
LinkDB
All DBs
Position
2:<2828175..>2830174
Genome browser
AA seq
442 aa
AA seq
DB search
MSHEEDLIDYSDEELQTTDAAATTAAPDAANGDAAKTGDLTVSGGRPDKKGSYVGIHSTG
FRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQ
LEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQNDVQTLSSKET
YPNIVVATPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQV
MMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNELLDN
LEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVAT
DVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEDDEKVLKDIE
KRFEVALPEYPEGGVDSTTYMA
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcacgaagaggatctcatcgactactccgacgaggagcttcagaccactgatgct
gccgcgaccaccgctgcccccgatgccgccaatggcgacgctgccaagacgggcgatctg
accgtctccggtggccgccccgacaagaagggcagctatgtcggcattcactcgaccggt
ttccgtgatttcctgctcaagggcgaactcctgcgcgccatcaccgactgcggcttcgaa
catccatcggaggtccagcaagtctgcattcccactgcgatcctgaatgtcgatgtcctg
tgccaagccaagtccggtctcggtaagaccgcggtcttcgtcctgaccacccttcaccag
ctggagcccgtgcccggcgagtgctcgattctcgtcatgtgccacacccgtgagctggcc
taccagattaagaacgagtatgcccgcttcagcaagtacctacccgacgtcaagactgct
gtcttctacggtggtactccgatccagaacgatgtccagaccttgtccagcaaggagacc
taccccaacattgttgtcgccactcccggccgtctgaatgccctcgttcgtgataagaag
ctatcgctgcgcaatgtcaaggctttcgttctcgacgagtgtgacaagatgctggatcag
attgacatgcgccgtgacgtgcaggagattttccgtgccacccccgccgacaagcaggtt
atgatgttcagcgctactctctcccaggagatccgtcccatctgcaagaagttcatgcgg
aacccgctcgaggtttacgttgacgatgacaccaagctcaccctccacggtttgcagcag
tactacatcaagctctccgaggccgagaagaaccgcaagctcaacgagctgctggacaac
ctggagttcaaccaggtgatcatcttcgtcaagagcactctccgtgccaacgagctggac
aagctgctgcgcgagtgcaacttccccagtatcgcggtgcactccggtgtcagccaagag
gagcgtatcaaacgctacaaggagttcaaggagttcaacaagcgtatctgcgttgccacc
gacgtgttcggccgtggtatcgatatcgagcggatcaatctggccatcaactacgatctt
cccgccgatgccgactcctaccttcaccgcgtcggtcgtgccggccgtttcggtaccaag
ggtctgtccatctccttcgtcagcaacgaggatgacgagaaggttctcaaggatattgag
aagcgcttcgaagttgcccttcctgaataccctgagggcggcgtcgactccaccacctac
atggcataa
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