Penicillium psychrofluorescens: 300789539
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Entry
300789539 CDS
T11417
Symbol
PFLUO_LOCUS3778
Name
(RefSeq) uncharacterized protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ppsf Penicillium psychrofluorescens
Pathway
ppsf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
300789539 (PFLUO_LOCUS3778)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsf03019
]
300789539 (PFLUO_LOCUS3778)
Enzymes [BR:
ppsf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
300789539 (PFLUO_LOCUS3778)
Messenger RNA biogenesis [BR:
ppsf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
300789539 (PFLUO_LOCUS3778)
mRNA degradation factors
3'-5' decay
Ski complex
300789539 (PFLUO_LOCUS3778)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
ResIII
Helicase_C
DEXQc_Suv3
Ski2_beta-barrel
DUF6211
Motif
Other DBs
NCBI-GeneID:
300789539
NCBI-ProteinID:
XP_073637853
LinkDB
All DBs
Position
2:complement(<4258206..>4262420)
Genome browser
AA seq
1307 aa
AA seq
DB search
MADFLASAMGQLRLNSNDLTPSAFDARLAEEENGTHDDLKPRKRTQPNAEDLLAELENDF
LTPSPRFGIKWLNHLQKRWDVSADYTDLFEIASTQTRTVTRFTREGLEGRVTGYHEVTVP
ATSTNAKNSTSLLRRPAGRADFVRGAAGFFPFAPGGLDGVEALAAMEADAQTTEQSRSGG
KQSGLDRIIDFGSEGGLLTIPPGFSRGLKLEEAKSKEGAEGDEEVEHALLQEESHLQVDE
AEPKPDVDARSKVEGEGEISDEEEEEDIDALLPVEFPALEPHNLLLAGVQKQRGREWAHV
VDVNKDIPNFSELVPDMAREWPFELDTFQKEAVYHLEGGDSVFVAAHTSAGKTVVAEYAI
ALAAKHMTKAIYTSPIKALSNQKYRDFRTTFDDVGILTGDVQINPEASCLIMTTEILRSM
LYRGADLIRDVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASW
VGRTKKKDIYVISTPKRPVPLEHYLWAGKDKFKVVDSNKRFLEGGWKKANDIMTGQDKLK
AQKAAESQAQSQAARGGGGPQGPQGRGRGQPNGRGGGAPRGNGQRGGPQQRGRGQGGRGQ
PSNRGTGNIARTGRGGGRTSAAQDRNVWVHLVSHLRKADLLPGCIFVFSKKRCEENADSL
SNQDFSTASEKSLIHMFIEKSLTRLKPEDRTLPQILRLRELLSRGIAVHHGGLLPIMKEI
VEILFAKSLVKVLFATETFAMGLNLPTRTVVFSGFRKHDGKSFRDLLPGEYTQMAGRAGR
RGLDTVGYVIITTSGRDEAPPAGALRKMILGDPTKLRSQFRLTYNMILNLLRVEALKIEE
MIKRSFSENATQALLPEHEKQVQLSEASLEKIKREPCEICDLDLAACHAAAMEYQRLTNE
LHAGLQSSPVGKRLFTIKRLVVYRKDGLRTAGVLVREGVTGGNIPCLQVCEIGTISNKRH
PSDILPFLPKFRPFFQQLPTSSANMHLKTCKIPLADLECVTNTQVKLGGPIWYLNIRKEA
VKFAEKELTKYTESWTDHTWDELDWARVKELQVRDILDQRQAQADIAQSCQSLKCPNFLK
HFEMQHDEWQVKENISQLKQLMSDQNLQLLPDYEQRIHVLRELGFVDEQSRVQLKGKVAC
EIHSADELVLTELILENVLAEFEPEEIVALLSAFVFQEKTDNKPTLTPRLEKGQETIVRI
SEKVNDFQVLHQVIQSSEDSNDFASQPRFGLAEVVYEWAKGMSFNRITDLTDVMEGTIVR
TITRLDETCREVKNAAKLVGDPSLYTKMQQAQELIKRDVIFAASLYM
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atggcggactttctggcctcggctatgggtcagctgagattgaattccaatgatctcacc
ccgtcggccttcgatgcgcgacttgcagaagaagagaatggcacacatgatgacttgaag
cctcgcaagcgaacccaaccaaatgccgaggatctgttggcggagctagagaatgatttc
ttgacaccgtcaccacggtttggtatcaaatggttgaaccatctgcaaaagcgatgggat
gtctcggccgactacaccgacctcttcgaaatcgcttcgacacagacgcgcaccgttact
cggttcacacgggaaggattggaaggacgggtgactggataccacgaagttacggttcct
gctacgagcacaaatgcaaagaactctacgtccctccttcgccgacctgcaggccgtgcc
gattttgttaggggagcggcgggtttctttccctttgcgccaggtggtttggatggtgtc
gaggcccttgcagccatggaggccgatgctcaaacgacagagcaatcgcgaagtggtggg
aaacagtctggtctagaccgaattattgattttgggtcggagggtggcctattgaccatt
ccgccagggtttagtcgcggtttgaagcttgaggaggcaaagtccaaggaaggcgccgag
ggagacgaagaggtcgagcatgctcttctccaagaggagagccatctgcaagttgacgaa
gccgaaccaaaaccagacgttgacgcacggtcaaaggttgagggtgaaggcgaaatcagc
gatgaggaggaggaagaagacattgatgccttgcttcccgtcgagttccctgctctagag
ccacacaacctattattggcaggagttcaaaaacaaagaggcagagaatgggctcacgtt
gttgacgtgaacaaagatattcctaacttcagcgagctcgtcccggatatggccagagag
tggcccttcgagctggatacattccagaaagaagctgtctaccaccttgaaggtggcgat
tcagtgtttgttgcagcccatacttccgccggcaagactgtcgtggctgaatacgcaatt
gctttggcggccaagcacatgacgaaggcaatctacacatctcccatcaaagctctcagc
aaccagaaatatcgcgatttccgaactacattcgatgatgttggaatcctgactggagat
gtccaaatcaatccagaggcaagctgtttgattatgacaactgagattttacgaagtatg
ctttatcgaggagctgatctgattcgcgatgtcgagtttgtcatctttgatgaagtacat
tatgtgaatgatcttgaacgaggtgtggtctgggaagaagttattatcatgcttcctgag
catgtcactctgatcctcttatctgccactgtccccaacacatacgaattcgcatcctgg
gtgggtcgcacgaagaagaaggatatctatgtcatttcaactcccaagcgacccgttccg
ctcgaacactatctctgggcagggaaggacaagtttaaggtcgtcgattcaaataagcga
ttcctggagggtggctggaagaaagcgaacgatatcatgacaggccaggataaactcaaa
gctcaaaaggctgccgaatcccaagcgcagtcccaggctgcgcgcggaggaggcgggcct
caaggacctcaaggacgaggccgcggacagcccaatggtagagggggcggcgcccctaga
ggcaatgggcagcgaggaggcccacagcaacgaggcagagggcaaggtggacgaggacaa
ccctctaaccgaggcactggaaatattgctcgcactggccgtggaggcggcaggacgtca
gctgctcaggacaggaatgtttgggtgcacctggtatcccatctgcgcaaagcggactta
ctccccggatgcattttcgtcttttccaagaagcgatgtgaagaaaatgcggactcgctc
tccaaccaggacttcagcactgcttcagagaagagcttgattcatatgtttattgagaaa
tctctcacccggttgaagcccgaagatagaacgcttccacagattctccggcttcgtgaa
ctgctgagcagaggaatcgctgtacaccatgggggtcttctgcccatcatgaaagagatt
gttgagattctgttcgcgaaatctttggtaaaggttctgttcgccacagaaacgtttgcc
atgggtttaaatctgccaactcgaacggttgttttctcgggattccgaaaacacgacggc
aagagcttccgggatcttcttcctggtgagtatacgcagatggctgggcgtgctggacga
agaggcctcgataccgtgggatacgttatcataactaccagcggcagagacgaggcaccc
cccgctggtgctctgcggaagatgatccttggcgatccgaccaagcttagatctcagttc
cggctgacgtacaatatgattttgaacctgctacgtgtggaggctctcaagatcgaggag
atgatcaagcggagtttcagcgagaatgccacacaagccttgcttccagagcatgagaaa
caagtccagctctcggaagccagtctcgagaagattaagcgggagccctgtgagatttgt
gatttggatctggcagcttgccatgcggccgcgatggagtaccaaagactcacgaatgag
ttgcatgcgggcctgcaatcatcgcctgtaggaaaacggctctttacaatcaagcgactc
gtggtttatcgaaaggatggattgcgtaccgccggtgtgcttgtccgcgagggagtgacc
ggtggaaatattccctgtctgcaggtgtgcgaaattggaaccatcagcaacaagcgccac
ccgagcgatattctccccttcttaccaaaattccgccctttcttccagcaactgcccacc
agttctgccaatatgcacctgaaaacatgcaaaatcccgctggccgatcttgagtgcgtt
acaaacacccaggtgaagctcggaggtccgatctggtacttgaacatcaggaaagaggcc
gttaaattcgcagagaaggagctcaccaagtacaccgaatcatggaccgaccatacgtgg
gatgagctagattgggcgcgagtcaaagaattgcaagtgcgagatatactcgatcagcga
caagctcaggccgacattgcccagtcctgccaaagtttgaagtgtcccaatttcttgaag
cattttgagatgcaacatgacgagtggcaggtcaaggagaatatctcgcagcttaaacag
ctcatgtcggatcaaaacctccaacttctaccggactacgagcagcgtatccatgtgttg
agggagctgggatttgtggacgagcagtcgcgtgtgcaactgaaaggcaaggtagcatgc
gagattcattccgccgatgagcttgttctcaccgaactgattctggaaaacgtgctggcc
gaattcgagccggaagagatcgttgccctcctctcggcctttgtcttccaggaaaagacc
gacaacaaacccacattgaccccacgtttggaaaagggccaggaaacgatcgtgcgaatc
tcggagaaggtcaatgacttccaggtgctgcaccaggtcatccagtccagcgaggactcg
aacgacttcgccagccagccgcgcttcgggcttgccgaggtcgtgtatgagtgggccaag
gggatgtccttcaatcgcatcacggacctgacggatgtgatggaggggacgattgtgcgc
accatcacgcggctggacgagacgtgccgcgaagtcaagaacgcggccaagctggtgggc
gacccatcgctgtacacgaaaatgcagcaggcgcaggagctgatcaagcgggatgtaatt
tttgcagcgtcgctgtacatgtag
DBGET
integrated database retrieval system
