Penicillium psychrofluorescens: 300791913
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Entry
300791913 CDS
T11417
Symbol
PFLUO_LOCUS5915
Name
(RefSeq) uncharacterized protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ppsf Penicillium psychrofluorescens
Pathway
ppsf03008
Ribosome biogenesis in eukaryotes
ppsf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
300791913 (PFLUO_LOCUS5915)
09123 Folding, sorting and degradation
03018 RNA degradation
300791913 (PFLUO_LOCUS5915)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppsf03021
]
300791913 (PFLUO_LOCUS5915)
03019 Messenger RNA biogenesis [BR:
ppsf03019
]
300791913 (PFLUO_LOCUS5915)
03009 Ribosome biogenesis [BR:
ppsf03009
]
300791913 (PFLUO_LOCUS5915)
03016 Transfer RNA biogenesis [BR:
ppsf03016
]
300791913 (PFLUO_LOCUS5915)
Transcription machinery [BR:
ppsf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
300791913 (PFLUO_LOCUS5915)
Messenger RNA biogenesis [BR:
ppsf03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
300791913 (PFLUO_LOCUS5915)
Ribosome biogenesis [BR:
ppsf03009
]
Eukaryotic type
Pre-60S particles
RNases
300791913 (PFLUO_LOCUS5915)
Transfer RNA biogenesis [BR:
ppsf03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
300791913 (PFLUO_LOCUS5915)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
300791913
NCBI-ProteinID:
XP_073639966
LinkDB
All DBs
Position
4:complement(<519893..>523099)
Genome browser
AA seq
1013 aa
AA seq
DB search
MGVPALFRWLSNKYPKIISPVIEEQAQQVDGEEIPIDTTGPNPNGEEMDNLYLDMNGIVH
PCTHPEGKPPPSNEQEMMLEIFKYTDRVVNMVRPRKLLMIAIDGVAPRAKMNQQRARRFR
SAQEAQENDDKKEELQKMIAKQNAKKGVDTGIQKEVVEKTWDSNVITPGTPFMDILAASL
RYWIAYKLNTDPGWEKMKIIISDATVPGEGEHKIMEFIRSQRASPEHDPNTRHVIYGLDA
DLIMLGLGTHEPHFRVLREDVFFQESKPRTCKLCGQPGHKAEECTGRPKEKSGEFDEKQH
AAPLKPFIWLHVSVLREYLAVELHVPNQPFPFDLERALDDWVFMCFFVGNDFLPHLPSLD
IRENGIDTLIALWRDNIPVMGGYLTQDGHVDLKRAQLILQGLAKQEDAIFRRRRQAEERR
AANEKRRKQQDQERNEERARKRRRSSPANGSPTHNRPRGGDGPAPPPGLELITPGRGNLA
RETRELTHSMVVNRGAVYRANMENKSAAAVLKDKLLRGSANGTAAEDTSSAAPSEGPSNN
GEEPTSPSVLGKRKADEPEDQEAEAGTPGRDTPIVTNNNNNNNKPPGDDLPEDTVKLWEP
GYADRYYEQKFGVGPEDHEFRHKVARAYAEGLAWVLLYYFQGCPSWTWYYPYHYAPFAAD
FVDIADMDLSFDKGKPFRPFEQLMGVLPASSNHALPPVFHPLMSDPESEIIDFYPEDFPV
DLNGKKFAWQGVVLLPFIDEKRLLTAMEKVYPLLTEDETSRNTHGKEVLLLSDRHPLYQD
LVANFYSKKPGPPQYKLNMRVSDGLGGIVERSDTYIPHSSLTSPLEDYGMPGVDEDRSLT
VHYAIPKSTHIHKSMLLRGVKFATPMLNSIDIRATQGRAQHTGRSHGGAPLGGGRGRGGQ
FNYAPDRSDRPNPFAAHLDPNFVPGAPPGGPPGWIPPVPGGGGYSRGPPGPPRGGMQQGY
PPGGQPGYGQPPPYNNGYGSQGHRGGGGGGYRGGNYRGQGRGNHSSRGGYGRY
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtccccgcgctctttagatggctctccaacaagtatcccaagattatctcgccg
gtgatcgaggagcaggcccaacaggtcgatggggaagagatccccatcgataccacaggc
cccaaccccaatggcgaggagatggacaacctgtatctggacatgaacggcatcgtccac
ccatgtactcaccccgagggcaagccgccaccatccaacgagcaggagatgatgctcgag
atcttcaagtacacggatcgggtcgtaaacatggtccgtccccggaagctgctcatgatc
gcgattgatggtgtcgccccgagagccaagatgaaccagcagcgtgctcgtcgattccgc
tccgcgcaagaggctcaagaaaacgacgacaagaaggaggagctgcagaagatgatcgcg
aagcagaatgcgaagaagggcgttgataccggcatccagaaagaagttgtcgagaagaca
tgggacagcaacgtgatcacccccggaacccccttcatggatattctcgccgcatcgctg
cggtactggattgcctacaaactcaatacggaccccgggtgggagaaaatgaaaatcatc
atctccgacgcgactgtccctggagaaggagagcacaagatcatggaattcatccgatct
cagcgagcgtcgcccgagcatgacccgaacacgcgccatgtcatctacggtttggatgcc
gatttgatcatgctgggcctggggacccatgagcctcacttccgagtcctgcgtgaggat
gtgttcttccaggaatcaaaacctcggacgtgtaaattgtgcgggcaaccgggtcacaaa
gccgaggagtgtacaggtcgtccaaaggagaagagcggagaatttgatgaaaagcaacat
gcggctcctctgaagccgttcatttggcttcatgtctcggtattgagagaatatctggcc
gtcgaactgcatgttcccaatcagccattcccatttgacctcgaaagagcattggatgac
tgggttttcatgtgtttcttcgttggtaacgattttcttcctcacttgccttccttagat
attcgtgagaacggtattgataccctaattgccctgtggcgcgacaacatccccgtcatg
ggggggtatctgacccaggacgggcatgtcgacttgaaaagggcccagttaatcctacag
gggttggccaagcaagaggatgccatcttccggcgtcgtaggcaggcggaggagagaaga
gcagccaatgaaaagagacggaagcaacaagatcaagaacgcaatgaggagcgcgccaga
aagcgaagacgcagctccccggccaacggctcgcctacacacaaccgacctcgtggcggt
gatggccccgcgcctccccctgggctcgagttgatcacccctggtcgtggaaacctcgca
cgagaaaccagagagctaacgcacagcatggttgttaaccgtggagctgtgtaccgtgcc
aacatggagaacaagagcgcagccgctgtgttgaaggacaagcttctgagaggctcggca
aacgggacggctgctgaagacacatcgtccgctgcgccctctgaggggccttcaaacaat
ggcgaagagccgacttcgccctcggtacttggcaagagaaaggccgacgagcctgaggat
caggaggctgaggctggaactcccggcagagacacccctatcgtgacaaacaataacaac
aacaacaataaacctccgggagacgaccttccagaggatactgtcaagctctgggagccc
ggatatgccgatcgctactatgagcaaaagttcggtgtggggcccgaggaccatgaattc
cgccataaagttgcacgagcctatgccgaaggtcttgcttgggtcctgctgtattatttc
caggggtgtccctcgtggacgtggtactatccctaccactacgcgccgtttgctgcagac
tttgtggatattgcggacatggacctcagcttcgacaagggcaagccgttccgacccttt
gagcagttgatgggagtcctgccggcgtcgtccaaccacgcactgcctcccgttttccat
cccctgatgagtgatcccgagagtgagatcatcgatttctatcccgaagatttccctgtg
gacctgaacggcaaaaagttcgcctggcagggtgtggttttgctgccttttatcgacgag
aagcgtctgttgaccgccatggagaaggtgtaccctcttcttacggaagacgagacgagc
cgcaacacgcacgggaaagaggtgcttcttctttctgatcggcatccgctctaccaggat
cttgttgccaacttctattccaagaagcccggtcccccgcagtacaagctgaacatgcgc
gtgagcgatggtctgggtggtatcgttgaacgcagcgatacctacattccccatagttcc
ttaacgtctccattggaggattacggtatgcccggtgtggacgaagatcgctccctaact
gttcactacgcgattcccaagtccactcacatccacaagtccatgcttcttcgtggcgtg
aagttcgcgaccccgatgctgaattccatcgacattcgggctacgcaaggccgggctcag
cacacgggccggtctcatggtggtgctccgctgggaggaggacgaggccggggcggccaa
ttcaactatgctcctgaccgctcggatcgcccgaatccatttgccgcccatctcgacccc
aatttcgtccccggcgcaccgcctggtggtcctccgggatggattcctcccgtccccggt
ggtggtggctactctcgcggcccacctgggcctccacgcggagggatgcagcagggttac
ccgcctggtggtcagccgggatacggccaacctcccccgtataataacgggtacggctcg
caagggcatcggggcggaggaggaggaggttatcgcgggggcaattaccgcggccaagga
cgtggcaaccactcttctcggggaggctatgggcggtattaa
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