Pseudomonas psychrophila: G5J76_03520
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Entry
G5J76_03520 CDS
T06988
Symbol
lysA
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
ppsh
Pseudomonas psychrophila
Pathway
ppsh00300
Lysine biosynthesis
ppsh00470
D-Amino acid metabolism
ppsh01100
Metabolic pathways
ppsh01110
Biosynthesis of secondary metabolites
ppsh01120
Microbial metabolism in diverse environments
ppsh01230
Biosynthesis of amino acids
Module
ppsh_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
ppsh00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
G5J76_03520 (lysA)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
G5J76_03520 (lysA)
Enzymes [BR:
ppsh01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
G5J76_03520 (lysA)
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Gene cluster
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Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
QIE31366
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Position
815638..816885
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AA seq
415 aa
AA seq
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MDAFNYRDGELFAEGVALTAIAERFGTPTYVYSRAHIEAQYNAYADALNGTPHLVCFAVK
ANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGSADKIVFSGVGKTRDDMRRALEVGVH
CFNVESTDELERLQVVAAEMGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAED
VYIRAAQLPNLEVVGVDCHIGSQLTTLEPFIDALDRLLALIDRLSDCGIYLRHIDLGGGL
GVRYRDEEPPLAGDYIKAVRERIEGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDF
AIVDAAMNDLIRPALYQAWMDVTAVRPRDTEARLYDIVGPICETGDFLAKDRSLALAEGD
LLAVHSAGAYGFVMSSNYNTRGRAAEVLVDGDQAFEVRRRETVAELFAGESLLAE
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggacgcttttaattaccgggacggcgagctgttcgccgaaggtgttgcgctgacggcc
attgccgaacgttttggcacgccgacttacgtttattcccgggcgcacatcgaagcgcaa
tacaacgcttacgccgatgccctgaacggcacgccacacctggtgtgtttcgcagtcaag
gccaactccaacctgggtgtgctcaatgtcctggcgcgtctgggcgccggttttgacatc
gtgtcccgtggcgagctggagcgtgtactggccgctggcggctcggccgacaagatcgtg
ttttcaggtgtaggcaagacccgtgatgacatgcgtcgcgccctggaagtcggcgtgcac
tgtttcaacgtcgagtccacagacgagctggagcgcctgcaggttgtggccgccgaaatg
ggtgttcgtgcaccgatttcgctgcgcgtgaacccggacgttgatgcgggcacgcacccg
tacatctccaccggcctcaaagaaaacaagttcggtatcgccatcgctgacgccgaagat
gtctacatccgtgctgcgcagttgcctaacctggaagtggtcggcgtcgattgccatatc
ggctcgcaactgaccaccctcgagccctttatcgatgctcttgatcgcctgttggcgctg
atcgatcgtttgagcgattgcggcatctacctgcgccacatcgacctgggtggtggcctg
ggcgtgcgttatcgagatgaagagccacctctggctggcgattacatcaaggccgtgcgt
gagcgcatcgaagggcgtgacctggcgctggtgttcgaaccgggccgcttcatcgtggcc
aacgcgggcgtgctgctgactcaggtcgagtacctcaagcataccgagcacaaagacttt
gccattgtcgatgcggcaatgaacgacctgattcgtccggcgctgtaccaggcctggatg
gacgtgaccgcggttcgcccgcgtgacaccgaggctcgtctttacgacatcgtcggtccg
atctgcgaaaccggcgacttcctggccaaggaccgctcactggcactggctgaaggcgac
ctgctggctgtgcattcggccggtgcttatggttttgtcatgagctcgaactacaacacc
cgtggccgcgccgccgaagttctggtggatggtgatcaggcgtttgaagtacgtcgtcgc
gagaccgtagccgagttgtttgctggcgaaagcctgctggcggagtga
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